Factsheet for TraesCS4B01G316300.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G171000.1
TraesCS1B01G186300.1
TraesCS1D01G168700.2
TraesCS2A01G368500.1
TraesCS2A01G590600.1
TraesCS2B01G385700.2
TraesCS2B01G593000.1
TraesCS2D01G365300.2
TraesCS2D01G563600.1
TraesCS2D01G563700.1
TraesCS6A01G237600.1
TraesCS6A01G272000.1
TraesCS6B01G266100.1
TraesCS6B01G299600.1
TraesCS6D01G220300.1
TraesCS6D01G252200.1
TraesCS7A01G300700.1
TraesCS7D01G296400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04340.1	TraesCS1A01G171000.1	AT1G03630.1	21798944
AT1G04340.1	TraesCS1B01G186300.1	AT1G03630.1	21798944
AT1G04340.1	TraesCS1D01G168700.2	AT1G03630.1	21798944
AT1G04340.1	TraesCS2A01G590600.1	AT1G03630.1	21798944
AT1G04340.1	TraesCS2B01G593000.1	AT1G03630.1	21798944
AT1G04340.1	TraesCS2D01G563600.1	AT1G03630.1	21798944
AT1G04340.1	TraesCS2D01G563700.1	AT1G03630.1	21798944
AT1G04340.1	TraesCS6A01G272000.1	AT3G50910.1	21798944
AT1G04340.1	TraesCS6B01G299600.1	AT3G50910.1	21798944
AT1G04340.1	TraesCS6D01G252200.1	AT3G50910.1	21798944
AT5G43460.1	TraesCS2A01G368500.1	AT3G60600.1	21798944
AT5G43460.1	TraesCS2B01G385700.2	AT3G60600.1	21798944
AT5G43460.1	TraesCS2D01G365300.2	AT3G60600.1	21798944
AT5G43460.1	TraesCS6A01G237600.1	AT3G60600.1	21798944
AT5G43460.1	TraesCS6B01G266100.1	AT3G60600.1	21798944
AT5G43460.1	TraesCS6D01G220300.1	AT3G60600.1	21798944
AT5G43460.1	TraesCS7A01G300700.1	AT3G60600.1	21798944
AT5G43460.1	TraesCS7D01G296400.1	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G415500.1	Wheat	extracellular	98.09	98.09
TraesCS4D01G312900.1	Wheat	extracellular	98.09	98.09
HORVU4Hr1G080140.1	Barley	extracellular	96.82	96.82
Os03t0149200-01	Rice	extracellular	88.53	88.53
EER92848	Sorghum	extracellular	80.25	80.25
GSMUA_Achr1P01370_001	Banana	extracellular	78.34	78.85
Zm00001d048402_P001	Maize	extracellular, golgi, plasma membrane	77.71	77.71
GSMUA_Achr4P26720_001	Banana	extracellular	77.07	77.56
GSMUA_Achr8P14320_001	Banana	plasma membrane	77.07	76.58
Zm00001d027680_P003	Maize	endoplasmic reticulum, extracellular, plasma membrane	78.98	75.61
GSMUA_Achr11P...	Banana	endoplasmic reticulum, extracellular, plasma membrane	75.16	75.16
Zm00001d032568_P001	Maize	endoplasmic reticulum, extracellular, vacuole	51.59	75.0
TraesCS2B01G040200.1	Wheat	extracellular	72.61	72.61
Zm00001d018662_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	73.25	71.88
Zm00001d032483_P001	Maize	endoplasmic reticulum, extracellular, vacuole	55.41	70.16
KRH32166	Soybean	endoplasmic reticulum	64.33	64.74
KRH19536	Soybean	endoplasmic reticulum	62.42	62.82
KRH67349	Soybean	plasma membrane	62.42	62.42
Solyc09g089670.2.1	Tomato	extracellular, plasma membrane, vacuole	61.78	60.25
KRG95647	Soybean	plasma membrane	59.87	59.87
VIT_05s0049g00200.t01	Wine grape	extracellular	59.24	59.24
CDY47153	Canola	endoplasmic reticulum	59.24	58.86
CDY12466	Canola	endoplasmic reticulum	59.24	58.86
Solyc03g005470.2.1	Tomato	plastid	58.6	58.23
Bra039861.1-P	Field mustard	plasma membrane	58.6	58.23
CDY12771	Canola	extracellular	57.32	57.69
Bra041032.1-P	Field mustard	extracellular	56.69	57.05
AT4G14420.1	Thale cress	plasma membrane	57.32	56.96
CDY49421	Canola	extracellular	56.05	56.41
CDY59304	Canola	plasma membrane	55.41	55.41
Bra027498.1-P	Field mustard	plasma membrane	54.14	54.14
CDY32939	Canola	plasma membrane	54.14	54.14
AT1G04340.1	Thale cress	plasma membrane	54.14	53.46
Bra030565.1-P	Field mustard	plasma membrane	56.05	53.33
AT5G43460.1	Thale cress	extracellular	52.23	53.25
CDY60669	Canola	extracellular, plasma membrane, vacuole	54.78	53.09
CDX86640	Canola	extracellular, plasma membrane, vacuole	55.41	53.05
CDY15499	Canola	plasma membrane	55.41	52.73
Bra015305.1-P	Field mustard	extracellular, plasma membrane, vacuole	54.14	52.47
KRG92302	Soybean	extracellular	52.23	52.23
KRG90387	Soybean	extracellular	52.23	52.23
CDY18220	Canola	extracellular, plasma membrane, vacuole	53.5	51.85
KRH31721	Soybean	endoplasmic reticulum	51.59	51.59
KRH34500	Soybean	extracellular	50.96	50.96
Solyc06g053660.2.1	Tomato	plasma membrane	49.04	49.04
PGSC0003DMT400044245	Potato	cytosol	53.5	47.46
PGSC0003DMT400034860	Potato	plastid	53.5	45.65
VIT_05s0049g00210.t01	Wine grape	plastid	66.24	45.22
KRH73866	Soybean	plastid	36.94	38.93
CDY10063	Canola	plasma membrane	42.04	36.46
PGSC0003DMT400042097	Potato	cytosol	42.04	33.85

Protein Annotations

EnsemblPlants:TraesCS4B01G316300.1	EnsemblPlantsGene:TraesCS4B01G316300	InterPro:HR_lesion	PANTHER:PTHR31474	PANTHER:PTHR31474:SF5	PFAM:PF05514
SEG:seg	SignalP:SignalP-noTM	TMHMM:TMhelix	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr4B:-:605829045..605831620

Molecular Weight (calculated)

17267.3 Da

IEP (calculated)

10.296

GRAVY (calculated)

0.449

Length

157 amino acids

Sequence
(BLAST)

001: MGFVSFAGRV LFASVFLLSA YQEFTEFGTD GGPAAKNLQP KFNSFTKNIS VHLGVVVPHV ELKHVIAATI GLKGLGGLLF IVSSSFGAYL LALYLAFITP
101: VVYDFYNYDM EKAEFVQIFM KFTQNLALFG ALLFFLGMKN SVPKRQAKKK AAKSKTT

Best Arabidopsis Sequence Match ( AT3G23190.1 )
(BLAST)

001: MEKTQESVVR YGKKIEKMPY LMPAGRVVFA SAFLVSAWRE YYGFGLAADE LRPKLGFFEN QAKAIVALGI LMKFVGGILF IFNTYVGAAL LLVYQAILSP
101: ILYDFYNRDY DRDHFTVFYT KFKEFVEETT SADGGVAMSL YTSVVNEESR QKFIDQLNEI ARIAISNPLF TPSDFNTLFI RFIKGVGIAA ALACFIAMKH
201: RHAVLIEKTS KKQKTN

Arabidopsis Description

At3g23190 [Source:UniProtKB/TrEMBL;Acc:Q9LTC9]
SUBAcon: [peroxisome,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.