Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 6
- vacuole 4
- plasma membrane 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030565.1-P | Field mustard | plasma membrane | 90.57 | 87.27 |
| CDX86640 | Canola | extracellular, plasma membrane, vacuole | 89.94 | 87.2 |
| CDY15499 | Canola | plasma membrane | 89.94 | 86.67 |
| AT5G43460.1 | Thale cress | extracellular | 81.76 | 84.42 |
| VIT_05s0049g00200.t01 | Wine grape | extracellular | 61.01 | 61.78 |
| KRG92302 | Soybean | extracellular | 59.12 | 59.87 |
| KRG90387 | Soybean | extracellular | 57.86 | 58.6 |
| KRH31721 | Soybean | endoplasmic reticulum | 57.86 | 58.6 |
| KRH34500 | Soybean | extracellular | 57.86 | 58.6 |
| Solyc06g053660.2.1 | Tomato | plasma membrane | 56.6 | 57.32 |
| TraesCS4A01G415500.1 | Wheat | extracellular | 55.35 | 56.05 |
| TraesCS4D01G312900.1 | Wheat | extracellular | 54.09 | 54.78 |
| AT4G14420.1 | Thale cress | plasma membrane | 54.09 | 54.43 |
| Os03t0149200-01 | Rice | extracellular | 53.46 | 54.14 |
| TraesCS4B01G316300.1 | Wheat | extracellular | 53.46 | 54.14 |
| Os04t0181100-01 | Rice | plasma membrane | 53.46 | 54.14 |
| HORVU4Hr1G080140.1 | Barley | extracellular | 53.46 | 54.14 |
| GSMUA_Achr2P04100_001 | Banana | extracellular | 53.46 | 53.8 |
| OQU81217 | Sorghum | extracellular | 52.83 | 53.5 |
| GSMUA_Achr1P01370_001 | Banana | extracellular | 52.2 | 53.21 |
| EER92848 | Sorghum | extracellular | 52.2 | 52.87 |
| TraesCS2D01G029000.1 | Wheat | extracellular | 52.2 | 52.87 |
| GSMUA_Achr4P26720_001 | Banana | extracellular | 51.57 | 52.56 |
| Zm00001d048402_P001 | Maize | extracellular, golgi, plasma membrane | 51.57 | 52.23 |
| TraesCS2B01G040200.1 | Wheat | extracellular | 51.57 | 52.23 |
| TraesCS2A01G026900.1 | Wheat | extracellular | 51.57 | 52.23 |
| Zm00001d032568_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 35.22 | 51.85 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, extracellular, plasma membrane | 50.94 | 51.59 |
| Os10t0445500-01 | Rice | plasma membrane | 50.31 | 50.63 |
| Zm00001d027680_P003 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 51.57 | 50.0 |
| GSMUA_Achr8P14320_001 | Banana | plasma membrane | 49.69 | 50.0 |
| Zm00001d032483_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 36.48 | 46.77 |
| Zm00001d018662_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 46.54 | 46.25 |
| KRH73866 | Soybean | plastid | 35.22 | 37.58 |
| PGSC0003DMT400042097 | Potato | cytosol | 45.91 | 37.44 |
| Zm00001d025020_P001 | Maize | extracellular, golgi, plasma membrane | 51.57 | 33.88 |
Protein Annotations
| MapMan:35.2 | EntrezGene:839547 | UniProt:A0A178WB80 | ProteinID:AAB70443.1 | ProteinID:AEE27686.1 | ArrayExpress:AT1G04340 |
| EnsemblPlantsGene:AT1G04340 | RefSeq:AT1G04340 | TAIR:AT1G04340 | RefSeq:AT1G04340-TAIR-G | EnsemblPlants:AT1G04340.1 | TAIR:AT1G04340.1 |
| EMBL:AY070751 | EMBL:AY093738 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:HR_lesion | RefSeq:NP_171929.1 | UniProt:O22690 | ProteinID:OAP14302.1 | PFAM:PF05514 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR31474 | PANTHER:PTHR31474:SF4 | SignalP:SignalP-noTM | TMHMM:TMhelix |
| UniParc:UPI00000A7F90 | SEG:seg | : | : | : | : |
Description
At1g04340/F19P19_23 [Source:UniProtKB/TrEMBL;Acc:O22690]
Coordinates
chr1:-:1162905..1164861
Molecular Weight (calculated)
17396.7 Da
IEP (calculated)
10.201
GRAVY (calculated)
0.609
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFFSFLGRV LFASLFILSA WQMFNDFGTD GGPAAKELAP KLDLTKAHLS SILGVSLPNL EVKQVVWAIV ALKGLGGLLF VIGNIFGAYL LAVYLVVVSP
101: ILYDFYNYGP EDRQFSLLLT EFLQSVALLG ALLFFIGMKN STTSSKRILK KRTPKPKAA
101: ILYDFYNYGP EDRQFSLLLT EFLQSVALLG ALLFFIGMKN STTSSKRILK KRTPKPKAA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.