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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 7
  • golgi 5
  • plasma membrane 7
  • endoplasmic reticulum 5
  • vacuole 5
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:extracellular
PPI

Inferred distinct locusB in Crop

locusBlocations
Os02t0643000-01
Os02t0704600-01
Os04t0534400-01
Os04t0678700-01
Os08t0156700-01
Os10t0496900-02

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G04340.1 Os04t0678700-01 AT1G03630.1 21798944
AT1G04340.1 Os10t0496900-02 AT1G03630.1 21798944
AT1G04340.1 Os02t0704600-01 AT3G50910.1 21798944
AT5G43460.1 Os02t0643000-01 AT3G60600.1 21798944
AT5G43460.1 Os04t0534400-01 AT3G60600.1 21798944
AT5G43460.1 Os08t0156700-01 AT3G60600.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4A01G415500.1 Wheat extracellular 89.81 89.81
TraesCS4D01G312900.1 Wheat extracellular 89.81 89.81
TraesCS4B01G316300.1 Wheat extracellular 88.53 88.53
HORVU4Hr1G080140.1 Barley extracellular 88.53 88.53
EER92848 Sorghum extracellular 81.53 81.53
Zm00001d048402_P001 Maize extracellular, golgi, plasma membrane 80.89 80.89
GSMUA_Achr1P01370_001 Banana extracellular 80.25 80.77
Zm00001d027680_P003 Maize endoplasmic reticulum, extracellular, plasma membrane 83.44 79.88
GSMUA_Achr4P26720_001 Banana extracellular 78.98 79.49
GSMUA_Achr8P14320_001 Banana plasma membrane 79.62 79.11
GSMUA_Achr11P... Banana endoplasmic reticulum, extracellular, plasma membrane 78.98 78.98
Zm00001d032568_P001 Maize endoplasmic reticulum, extracellular, vacuole 54.14 78.7
Os10t0445500-01 Rice plasma membrane 77.71 77.22
Os04t0181100-01 Rice plasma membrane 75.8 75.8
Zm00001d018662_P001 Maize endoplasmic reticulum, extracellular, plasma membrane 75.16 73.75
Zm00001d032483_P001 Maize endoplasmic reticulum, extracellular, vacuole 57.96 73.39
KRH32166 Soybean endoplasmic reticulum 66.24 66.67
KRH67349 Soybean plasma membrane 64.97 64.97
KRH19536 Soybean endoplasmic reticulum 64.33 64.74
Solyc09g089670.2.1 Tomato extracellular, plasma membrane, vacuole 65.61 63.98
KRG95647 Soybean plasma membrane 63.69 63.69
VIT_05s0049g00200.t01 Wine grape extracellular 61.78 61.78
CDY47153 Canola endoplasmic reticulum 61.78 61.39
CDY12466 Canola endoplasmic reticulum 61.78 61.39
Bra039861.1-P Field mustard plasma membrane 61.15 60.76
CDY12771 Canola extracellular 59.87 60.26
Solyc03g005470.2.1 Tomato plastid 60.51 60.13
Bra041032.1-P Field mustard extracellular 59.24 59.62
CDY49421 Canola extracellular 58.6 58.97
AT4G14420.1 Thale cress plasma membrane 59.24 58.86
CDY59304 Canola plasma membrane 56.05 56.05
KRG90387 Soybean extracellular 55.41 55.41
KRH31721 Soybean endoplasmic reticulum 54.78 54.78
Bra027498.1-P Field mustard plasma membrane 54.78 54.78
CDY32939 Canola plasma membrane 54.78 54.78
Bra030565.1-P Field mustard plasma membrane 56.69 53.94
CDY15499 Canola plasma membrane 56.69 53.94
AT5G43460.1 Thale cress extracellular 52.87 53.9
Bra015305.1-P Field mustard extracellular, plasma membrane, vacuole 55.41 53.7
CDY60669 Canola extracellular, plasma membrane, vacuole 55.41 53.7
KRH34500 Soybean extracellular 53.5 53.5
KRG92302 Soybean extracellular 53.5 53.5
AT1G04340.1 Thale cress plasma membrane 54.14 53.46
CDY18220 Canola extracellular, plasma membrane, vacuole 54.78 53.09
CDX86640 Canola extracellular, plasma membrane, vacuole 55.41 53.05
PGSC0003DMT400044245 Potato cytosol 56.69 50.28
Solyc06g053660.2.1 Tomato plasma membrane 49.68 49.68
VIT_05s0049g00210.t01 Wine grape plastid 69.43 47.39
PGSC0003DMT400034860 Potato plastid 54.14 46.2
KRH73866 Soybean plastid 38.22 40.27
CDY10063 Canola plasma membrane 43.31 37.57
PGSC0003DMT400042097 Potato cytosol 42.04 33.85
Protein Annotations
MapMan:35.2EntrezGene:4331628ProteinID:AAN87739.1ProteinID:ABF93995.1EMBL:AK243567ProteinID:BAF10885.1
ProteinID:BAS82306.1GO:GO:0005575GO:GO:0016020GO:GO:0016021InterPro:HR_lesionEnsemblPlantsGene:Os03g0149200
EnsemblPlants:Os03t0149200-01PFAM:PF05514PANTHER:PTHR31474PANTHER:PTHR31474:SF5UniProt:Q8H080SignalP:SignalP-noTM
TMHMM:TMhelixUniParc:UPI00000ADC1FRefSeq:XP_015628629.1SEG:seg::
Description
HR-like lesion-inducer family protein. (Os03t0149200-01)
Coordinates
chr3:-:2739653..2743118
Molecular Weight (calculated)
17305.4 Da
IEP (calculated)
10.335
GRAVY (calculated)
0.423
Length
157 amino acids
Sequence
(BLAST)
001: MGFVSFAGRV LFASVFLLSA YQEFSEFGAD GGPAAKALRP KYNVFTKNIS AHLGVAVPHV ELKHIVAATI GLKGLGGLLF ILSSSFGAYL LLIYLAFITP
101: VVYDFYNYDM EKSEFVQLFM KFTQNLALFG ALLFFLGMKN SIPKRQAKKK APKSKTN
Best Arabidopsis Sequence Match ( AT4G14420.1 )
(BLAST)
001: MELASFLGRA LFVSVFLLSA WQEFNDFGED GGRSAKSLKP KFNAFVNHVT THTGQQLPPV DMKILVAAAI ALKGIGGLLF VFGSSLGAYL LLLHQAVATP
101: ILYDFYNYDV DRKEFGQLFS KFTQSLALLG GLLFFIGMKN SRKHGRQLRK KAPKAKAN
Arabidopsis Description
AT4g14420/dl3250c [Source:UniProtKB/TrEMBL;Acc:O23298]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.