Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- golgi 4
- plasma membrane 5
- endoplasmic reticulum 4
- vacuole 4
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS4B01G316300.1 | Wheat | extracellular | 98.09 | 98.09 |
TraesCS4D01G312900.1 | Wheat | extracellular | 98.09 | 98.09 |
HORVU4Hr1G080140.1 | Barley | extracellular | 96.18 | 96.18 |
Os03t0149200-01 | Rice | extracellular | 89.81 | 89.81 |
EER92848 | Sorghum | extracellular | 78.34 | 78.34 |
GSMUA_Achr1P01370_001 | Banana | extracellular | 77.71 | 78.21 |
GSMUA_Achr4P26720_001 | Banana | extracellular | 76.43 | 76.92 |
Zm00001d048402_P001 | Maize | extracellular, golgi, plasma membrane | 76.43 | 76.43 |
GSMUA_Achr8P14320_001 | Banana | plasma membrane | 76.43 | 75.95 |
Zm00001d032568_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 52.23 | 75.93 |
GSMUA_Achr11P... | Banana | endoplasmic reticulum, extracellular, plasma membrane | 75.8 | 75.8 |
Zm00001d027680_P003 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 78.98 | 75.61 |
Zm00001d032483_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 56.05 | 70.97 |
TraesCS2A01G026900.1 | Wheat | extracellular | 70.7 | 70.7 |
Zm00001d018662_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 71.97 | 70.62 |
KRH32166 | Soybean | endoplasmic reticulum | 64.33 | 64.74 |
KRH19536 | Soybean | endoplasmic reticulum | 62.42 | 62.82 |
KRH67349 | Soybean | plasma membrane | 62.42 | 62.42 |
KRG95647 | Soybean | plasma membrane | 61.15 | 61.15 |
Solyc09g089670.2.1 | Tomato | extracellular, plasma membrane, vacuole | 62.42 | 60.87 |
VIT_05s0049g00200.t01 | Wine grape | extracellular | 60.51 | 60.51 |
CDY47153 | Canola | endoplasmic reticulum | 60.51 | 60.13 |
CDY12466 | Canola | endoplasmic reticulum | 60.51 | 60.13 |
Bra039861.1-P | Field mustard | plasma membrane | 59.87 | 59.49 |
CDY12771 | Canola | extracellular | 58.6 | 58.97 |
Bra041032.1-P | Field mustard | extracellular | 57.96 | 58.33 |
Solyc03g005470.2.1 | Tomato | plastid | 58.6 | 58.23 |
AT4G14420.1 | Thale cress | plasma membrane | 58.6 | 58.23 |
CDY49421 | Canola | extracellular | 57.32 | 57.69 |
CDY59304 | Canola | plasma membrane | 57.32 | 57.32 |
Bra027498.1-P | Field mustard | plasma membrane | 56.05 | 56.05 |
CDY32939 | Canola | plasma membrane | 56.05 | 56.05 |
AT1G04340.1 | Thale cress | plasma membrane | 56.05 | 55.35 |
AT5G43460.1 | Thale cress | extracellular | 54.14 | 55.19 |
Bra030565.1-P | Field mustard | plasma membrane | 57.96 | 55.15 |
CDY60669 | Canola | extracellular, plasma membrane, vacuole | 56.69 | 54.94 |
CDX86640 | Canola | extracellular, plasma membrane, vacuole | 57.32 | 54.88 |
CDY15499 | Canola | plasma membrane | 57.32 | 54.55 |
Bra015305.1-P | Field mustard | extracellular, plasma membrane, vacuole | 56.05 | 54.32 |
CDY18220 | Canola | extracellular, plasma membrane, vacuole | 55.41 | 53.7 |
KRG92302 | Soybean | extracellular | 52.23 | 52.23 |
KRG90387 | Soybean | extracellular | 52.23 | 52.23 |
KRH31721 | Soybean | endoplasmic reticulum | 51.59 | 51.59 |
Solyc06g053660.2.1 | Tomato | plasma membrane | 50.96 | 50.96 |
KRH34500 | Soybean | extracellular | 50.96 | 50.96 |
PGSC0003DMT400044245 | Potato | cytosol | 53.5 | 47.46 |
VIT_05s0049g00210.t01 | Wine grape | plastid | 68.15 | 46.52 |
PGSC0003DMT400034860 | Potato | plastid | 53.5 | 45.65 |
KRH73866 | Soybean | plastid | 36.94 | 38.93 |
CDY10063 | Canola | plasma membrane | 43.31 | 37.57 |
PGSC0003DMT400042097 | Potato | cytosol | 43.31 | 34.87 |
Protein Annotations
EnsemblPlants:TraesCS4A01G415500.1 | EnsemblPlantsGene:TraesCS4A01G415500 | InterPro:HR_lesion | PANTHER:PTHR31474 | PANTHER:PTHR31474:SF1 | PFAM:PF05514 |
SEG:seg | SignalP:SignalP-noTM | TMHMM:TMhelix | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr4A:-:685421128..685423728
Molecular Weight (calculated)
17222.3 Da
IEP (calculated)
10.296
GRAVY (calculated)
0.459
Length
157 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFVSFAGRV LFASVFLLSA YQEFTEFGTD GGPAAKNLAP KFNSFTKNIS VHLGVVVPHV ELKHVVAATI GLKGLGGLLF IVSSSFGAYL LALYLAFITP
101: VVYDFYNYDM EKAEFVQIFM KFTQNLALFG ALLFFLGMKN SVPKRQAKKK APKSKTT
101: VVYDFYNYDM EKAEFVQIFM KFTQNLALFG ALLFFLGMKN SVPKRQAKKK APKSKTT
001: MGFFSFLGRV LFASLFILSA WQMFNDFGTD GGPAAKELAP KLDLTKAHLS SILGVSLPNL EVKQVVWAIV ALKGLGGLLF VIGNIFGAYL LAVYLVVVSP
101: ILYDFYNYGP EDRQFSLLLT EFLQSVALLG ALLFFIGMKN STTSSKRILK KRTPKPKAA
101: ILYDFYNYGP EDRQFSLLLT EFLQSVALLG ALLFFIGMKN STTSSKRILK KRTPKPKAA
Arabidopsis Description
At1g04340/F19P19_23 [Source:UniProtKB/TrEMBL;Acc:O22690]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.