Factsheet for TraesCS1D01G168700.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G171000.1
TraesCS1A01G340600.1
TraesCS1B01G186300.1
TraesCS1D01G168700.2
TraesCS1D01G342600.1
TraesCS2A01G346700.1
TraesCS2A01G368500.1
TraesCS2A01G590600.1
TraesCS2B01G365000.1
TraesCS2B01G385700.2
TraesCS2B01G593000.1
TraesCS2D01G345400.1
TraesCS2D01G365300.2
TraesCS2D01G563600.1
TraesCS2D01G563700.1
TraesCS3A01G274800.1
TraesCS3A01G313000.1
TraesCS3B01G158900.1
TraesCS3B01G308400.1
TraesCS3D01G141300.1
TraesCS3D01G274500.1
TraesCS5A01G095100.1
TraesCS5B01G101300.1
TraesCS5D01G107800.1
TraesCS6A01G237600.1
TraesCS6B01G266100.1
TraesCS6D01G220300.1
TraesCS7A01G300700.1
TraesCS7D01G296400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03630.1	TraesCS1A01G171000.1	AT1G03630.1	21798944
AT1G03630.1	TraesCS1B01G186300.1	AT1G03630.1	21798944
AT1G03630.1	TraesCS1D01G168700.2	AT1G03630.1	21798944
AT1G03630.1	TraesCS2A01G590600.1	AT1G03630.1	21798944
AT1G03630.1	TraesCS2B01G593000.1	AT1G03630.1	21798944
AT1G03630.1	TraesCS2D01G563600.1	AT1G03630.1	21798944
AT1G03630.1	TraesCS2D01G563700.1	AT1G03630.1	21798944
AT1G03630.1	TraesCS2A01G346700.1	AT1G27300.1	21798944
AT1G03630.1	TraesCS2B01G365000.1	AT1G27300.1	21798944
AT1G03630.1	TraesCS2D01G345400.1	AT1G27300.1	21798944
AT1G03630.1	TraesCS1A01G340600.1	AT3G16310.1	21798944
AT1G03630.1	TraesCS1D01G342600.1	AT3G16310.1	21798944
AT1G03630.1	TraesCS3A01G274800.1	AT3G16310.1	21798944
AT1G03630.1	TraesCS3A01G313000.1	AT3G16310.1	21798944
AT1G03630.1	TraesCS3B01G158900.1	AT3G16310.1	21798944
AT1G03630.1	TraesCS3B01G308400.1	AT3G16310.1	21798944
AT1G03630.1	TraesCS3D01G141300.1	AT3G16310.1	21798944
AT1G03630.1	TraesCS3D01G274500.1	AT3G16310.1	21798944
AT1G03630.1	TraesCS2A01G368500.1	AT3G60600.1	21798944
AT1G03630.1	TraesCS2B01G385700.2	AT3G60600.1	21798944
AT1G03630.1	TraesCS2D01G365300.2	AT3G60600.1	21798944
AT1G03630.1	TraesCS6A01G237600.1	AT3G60600.1	21798944
AT1G03630.1	TraesCS6B01G266100.1	AT3G60600.1	21798944
AT1G03630.1	TraesCS6D01G220300.1	AT3G60600.1	21798944
AT1G03630.1	TraesCS7A01G300700.1	AT3G60600.1	21798944
AT1G03630.1	TraesCS7D01G296400.1	AT3G60600.1	21798944
AT1G03630.1	TraesCS1A01G171000.1	AT4G27440.1	21798944
AT1G03630.1	TraesCS1B01G186300.1	AT4G27440.1	21798944
AT1G03630.1	TraesCS1D01G168700.2	AT4G27440.1	21798944
AT1G03630.1	TraesCS2A01G590600.1	AT4G27440.1	21798944
AT1G03630.1	TraesCS2B01G593000.1	AT4G27440.1	21798944
AT1G03630.1	TraesCS2D01G563600.1	AT4G27440.1	21798944
AT1G03630.1	TraesCS2D01G563700.1	AT4G27440.1	21798944
AT1G03630.1	TraesCS5A01G095100.1	AT5G11980.1	21798944
AT1G03630.1	TraesCS5B01G101300.1	AT5G11980.1	21798944
AT1G03630.1	TraesCS5D01G107800.1	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G186300.1	Wheat	plastid	93.77	98.99
HORVU1Hr1G044680.1	Barley	plastid	93.53	98.73
TraesCS1A01G171000.1	Wheat	golgi, plastid	98.32	98.32
EER94008	Sorghum	plastid	84.41	89.34
Zm00001d032576_P001	Maize	plastid	83.93	88.38
Zm00001d013937_P001	Maize	plastid	83.69	88.13
Os10t0496900-02	Rice	plastid	83.93	87.06
TraesCS2D01G563700.1	Wheat	cytosol	46.52	80.5
GSMUA_Achr11P...	Banana	plastid	74.1	78.03
VIT_19s0014g03160.t01	Wine grape	plastid	73.14	77.02
CDX89249	Canola	plastid	73.14	76.83
CDY29311	Canola	plastid	73.14	76.83
VIT_12s0059g00270.t01	Wine grape	plastid	73.38	76.69
Bra026349.1-P	Field mustard	plastid	71.22	76.55
Solyc10g006900.2.1	Tomato	plastid	72.42	76.46
PGSC0003DMT400064369	Potato	plastid	72.66	76.13
Solyc12g013710.1.1	Tomato	extracellular, nucleus, plastid	72.42	76.07
PGSC0003DMT400039734	Potato	plastid	72.42	76.07
KRH27209	Soybean	nucleus, plastid	72.66	75.94
AT4G27440.1	Thale cress	plastid	72.9	75.81
Bra019049.1-P	Field mustard	plastid	71.7	75.13
AT5G54190.1	Thale cress	plastid	72.9	75.06
TraesCS2D01G563600.1	Wheat	golgi, plastid	69.54	74.74
KRH55334	Soybean	plastid	71.22	74.44
AT1G03630.1	Thale cress	plastid	71.46	74.31
Bra003004.1-P	Field mustard	plastid	71.7	74.19
CDY51384	Canola	plastid	70.5	73.87
CDY14325	Canola	plastid	71.46	73.76
Bra033415.1-P	Field mustard	plastid	70.74	73.75
Bra030540.1-P	Field mustard	plastid	70.26	73.62
CDY15470	Canola	plastid	70.26	73.62
CDY18175	Canola	plastid	70.5	73.5
CDX89877	Canola	plastid	70.5	73.5
PGSC0003DMT400047264	Potato	plastid	69.78	73.12
Solyc07g054210.2.1	Tomato	plastid	69.54	72.68
CDX98171	Canola	plastid	60.19	71.92
CDY18309	Canola	plastid	59.95	71.63
KRH26074	Soybean	plastid	58.51	71.34
CDY29840	Canola	plastid	71.7	47.24
CDX92832	Canola	plastid	71.7	46.94
TraesCS4D01G002700.2	Wheat	mitochondrion, plastid	25.9	34.29
TraesCS4D01G003200.1	Wheat	golgi	25.18	33.23
TraesCS4D01G003400.2	Wheat	mitochondrion	23.26	30.12
TraesCS5D01G287000.1	Wheat	plastid	23.26	30.12
TraesCS1D01G210800.1	Wheat	plastid	21.82	28.62
TraesCS4D01G093500.1	Wheat	mitochondrion	21.1	27.24
TraesCS4D01G351800.1	Wheat	mitochondrion	20.86	26.05
TraesCS4D01G351700.1	Wheat	mitochondrion, plastid	21.1	25.0
TraesCS7D01G055800.1	Wheat	mitochondrion, plastid	21.34	24.59
TraesCS3D01G077500.2	Wheat	cytosol, plastid	19.9	23.71
TraesCS6D01G051500.1	Wheat	cytosol	21.58	22.0

Protein Annotations

EnsemblPlants:TraesCS1D01G168700.2	EnsemblPlantsGene:TraesCS1D01G168700	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016630	GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf	InterPro:Prochl_reduct	InterPro:SDR_fam
KEGG:00860+1.3.1.33	PANTHER:PTHR44419	PANTHER:PTHR44419:SF2	PFAM:PF00106	PRINTS:PR00081	SEG:seg
SUPFAM:SSF51735	TIGR:cd09810	TIGRFAMs:TIGR01289	MapMan:7.12.6.5.1	:	:

Description

No Description!

Coordinates

chr1D:+:240989009..240990600

Molecular Weight (calculated)

44719.5 Da

IEP (calculated)

9.420

GRAVY (calculated)

-0.115

Length

417 amino acids

Sequence
(BLAST)

001: MALQAATSFL PSALSARKEG AAKDSAFFRV CLADGLKFDT TSLGLRTKTV ERALLVAARS DRHACHEPTQ RVNTSSVAIR AQAAAVSAPT ATPASPSGKK
101: TVRTGNAIIT GASSGLGLAT AKALAESGKW HVIMACRDYL KTARAARAAG MPKGSYTIVH LDLASLDSVR QFVKNVRQLD MPIDVVVCNA AVYQPTAKEP
201: SFTADGFEMS VGVNHLGHFL LARELLEDLK ASDYPSKRLI IVGSITGNTN TLAGNVPPKA NLGDLRGLAA GLNGVGSAAM IDGAEFDGAK AYKDSKVCNM
301: LTMQEFHRRY HEETGVTFAS LYPGCIATTG LFREHIPLFR LLFPPFQKYI TKGYVSEEEA GKRLAQVVSE PSLTKSGVYW SWNKNSASFE NQLSEEASDT
401: EKARKVWELS EKLVGLA

Best Arabidopsis Sequence Match ( AT5G54190.1 )
(BLAST)

001: MALQAASLVS SAFSVRKDGK LNASASSSFK ESSLFGVSLS EQSKADFVSS SLRCKREQSL RNNKAIIRAQ AIATSTPSVT KSSLDRKKTL RKGNVVVTGA
101: SSGLGLATAK ALAETGKWHV IMACRDFLKA ERAAQSAGMP KDSYTVMHLD LASLDSVRQF VDNFRRAEMP LDVLVCNAAV YQPTANQPTF TAEGFELSVG
201: INHLGHFLLS RLLIDDLKNS DYPSKRLIIV GSITGNTNTL AGNVPPKANL GDLRGLAGGL NGLNSSAMID GGDFVGAKAY KDSKVCNMLT MQEFHRRFHE
301: DTGITFASLY PGCIATTGLF REHIPLFRTL FPPFQKYITK GYVSESEAGK RLAQVVADPS LTKSGVYWSW NKTSASFENQ LSQEASDVEK ARRVWEVSEK
401: LVGLA

Arabidopsis Description

PORAPORA [Source:UniProtKB/TrEMBL;Acc:A0A178UR02]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.