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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 8
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
 plastid: 20089766
plastid: 21196305
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264
msms PMID: 27297264 doi
D Dahal, KJ Newton, BP Mooney
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID: 20089766 doi
G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.
msms PMID: 23198870 doi
M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.
msms PMID: 22065420 doi
W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.
msms PMID: 21196305
XY Liu, YD Wu, ZY Shen, Z Shen, HH Li, XM Yu, XF Yan, CH Guo, BC Wang
Key Laboratory of Forest Tree Genetic Improvement and Biotechnology, Ministry of Education, Northeast Forestry University, Harbin, China.
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d001820_P001
Zm00001d006805_P001
Zm00001d008871_P001
Zm00001d010783_P001
Zm00001d013937_P001
Zm00001d016570_P001
Zm00001d017390_P001
Zm00001d025939_P003
Zm00001d028871_P001
Zm00001d032576_P001
Zm00001d036342_P001
Zm00001d038803_P001
Zm00001d049553_P001
Zm00001d050563_P001
Zm00001d051288_P001
Zm00001d053677_P001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G03630.1 Zm00001d001820_P001 AT1G03630.1 21798944
AT1G03630.1 Zm00001d013937_P001 AT1G03630.1 21798944
AT1G03630.1 Zm00001d032576_P001 AT1G03630.1 21798944
AT1G03630.1 Zm00001d016570_P001 AT1G27300.1 21798944
AT1G03630.1 Zm00001d050563_P001 AT1G27300.1 21798944
AT1G03630.1 Zm00001d008871_P001 AT3G16310.1 21798944
AT1G03630.1 Zm00001d010783_P001 AT3G16310.1 21798944
AT1G03630.1 Zm00001d038803_P001 AT3G16310.1 21798944
AT1G03630.1 Zm00001d017390_P001 AT3G60600.1 21798944
AT1G03630.1 Zm00001d025939_P003 AT3G60600.1 21798944
AT1G03630.1 Zm00001d036342_P001 AT3G60600.1 21798944
AT1G03630.1 Zm00001d049553_P001 AT3G60600.1 21798944
AT1G03630.1 Zm00001d051288_P001 AT3G60600.1 21798944
AT1G03630.1 Zm00001d001820_P001 AT4G27440.1 21798944
AT1G03630.1 Zm00001d013937_P001 AT4G27440.1 21798944
AT1G03630.1 Zm00001d032576_P001 AT4G27440.1 21798944
AT1G03630.1 Zm00001d006805_P001 AT5G11980.1 21798944
AT1G03630.1 Zm00001d028871_P001 AT5G11980.1 21798944
AT1G03630.1 Zm00001d053677_P001 AT5G11980.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EER94008 Sorghum plastid 96.97 97.46
Zm00001d032576_P001 Maize plastid 95.45 95.45
Os10t0496900-02 Rice plastid 90.4 89.05
HORVU1Hr1G044680.1 Barley plastid 88.38 88.61
TraesCS1B01G186300.1 Wheat plastid 88.13 88.35
TraesCS1A01G171000.1 Wheat golgi, plastid 88.38 83.93
TraesCS1D01G168700.2 Wheat plastid 88.13 83.69
GSMUA_Achr11P... Banana plastid 79.8 79.8
CDX89249 Canola plastid 79.55 79.35
CDY29311 Canola plastid 79.29 79.09
Bra026349.1-P Field mustard plastid 77.27 78.87
VIT_19s0014g03160.t01 Wine grape plastid 78.54 78.54
AT4G27440.1 Thale cress plastid 79.04 78.05
Bra019049.1-P Field mustard plastid 78.28 77.89
VIT_12s0059g00270.t01 Wine grape plastid 78.03 77.44
Solyc12g013710.1.1 Tomato extracellular, nucleus, plastid 77.27 77.08
Solyc10g006900.2.1 Tomato plastid 76.77 76.96
PGSC0003DMT400039734 Potato plastid 77.02 76.83
KRH27209 Soybean nucleus, plastid 77.27 76.69
PGSC0003DMT400064369 Potato plastid 77.02 76.63
AT1G03630.1 Thale cress plastid 77.53 76.56
Bra033415.1-P Field mustard plastid 77.27 76.5
CDY15470 Canola plastid 76.77 76.38
CDY51384 Canola plastid 76.77 76.38
Bra030540.1-P Field mustard plastid 76.77 76.38
CDY18175 Canola plastid 77.02 76.25
CDX89877 Canola plastid 77.02 76.25
AT5G54190.1 Thale cress plastid 77.78 76.05
KRH55334 Soybean plastid 76.52 75.94
Bra003004.1-P Field mustard plastid 76.77 75.43
CDY14325 Canola plastid 76.77 75.25
KRH26074 Soybean plastid 64.14 74.27
PGSC0003DMT400047264 Potato plastid 73.99 73.62
Solyc07g054210.2.1 Tomato plastid 73.74 73.18
Zm00001d001820_P001 Maize plastid 71.21 72.87
CDX98171 Canola plastid 63.64 72.21
CDY18309 Canola plastid 63.38 71.92
CDX92832 Canola plastid 79.29 49.29
CDY29840 Canola plastid 78.28 48.97
Zm00001d047150_P003 Maize plastid 25.0 31.43
Zm00001d039848_P002 Maize cytosol, mitochondrion, plastid 23.48 29.06
Zm00001d029840_P003 Maize plastid 23.74 28.14
Zm00001d019754_P001 Maize mitochondrion, plastid 24.75 27.76
Zm00001d045495_P001 Maize mitochondrion 23.23 25.48
Zm00001d027353_P001 Maize mitochondrion 22.98 25.21
Zm00001d025129_P001 Maize mitochondrion 14.65 24.68
Zm00001d053067_P001 Maize plastid 22.22 23.98
Zm00001d039397_P001 Maize cytosol 13.38 21.81
Zm00001d054039_P001 Maize cytosol 20.71 19.71
Zm00001d014994_P001 Maize cytosol 20.96 17.44
Protein Annotations
KEGG:00860+1.3.1.33EntrezGene:100381341Gene3D:3.40.50.720MapMan:7.12.6.5.1ProteinID:AQK64842.1UniProt:B6TDR4
EMBL:BT086493EMBL:EU963129GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009507
GO:GO:0009536GO:GO:0009987GO:GO:0015979GO:GO:0015995GO:GO:0016491GO:GO:0016630
GO:GO:0055114InterPro:NAD(P)-bd_dom_sfPFAM:PF00106PRINTS:PR00081PANTHER:PTHR44419PANTHER:PTHR44419:SF2
InterPro:Prochl_reductInterPro:SDR_famSUPFAM:SSF51735TIGRFAMs:TIGR01289UniParc:UPI000182C3E0EnsemblPlantsGene:Zm00001d013937
EnsemblPlants:Zm00001d013937_P001EnsemblPlants:Zm00001d013937_T001SEG:seg:::
Description
GRMZM2G073351Protochlorophyllide reductase C chloroplastic
Coordinates
chr5:-:25431430..25434346
Molecular Weight (calculated)
42328.6 Da
IEP (calculated)
9.413
GRAVY (calculated)
-0.098
Length
396 amino acids
Sequence
(BLAST)
001: MALQAATSFL PSALSARKEG SVKDSASFLG VRLAADGLKL DTTALGLRTV RVSRSADIRA QTAAVSSPSV TPASPSGKKT LRKGTAVITG ASSGLGLATA
101: KALAETGKWH VIMACRDFLK ASRAAKAAGM DKDSFTVVHL DLASLDSVRQ FVRNVRQLEM PIDVVVCNAA VYQPTAKEPS YTADGFEMSV GVNHLGHFLL
201: ARELLSDLQS SDYPSKRLII VGSITGNTNT LAGNVPPKAN LGDLRGLAGG LNGVGSSVMI DGGEFDGAKA YKDSKVCNML TMQEFHRRYH EETGVTFASL
301: YPGCIATTGL FREHIPLFRL LFPPFQKYIT KGYVSEEEAG KRLAQVVSDP SLTKSGVYWS WNKNSASFEN QLSEEASDAD KAKKLWEISE KLVGLA
Best Arabidopsis Sequence Match ( AT5G54190.1 )
(BLAST)
001: MALQAASLVS SAFSVRKDGK LNASASSSFK ESSLFGVSLS EQSKADFVSS SLRCKREQSL RNNKAIIRAQ AIATSTPSVT KSSLDRKKTL RKGNVVVTGA
101: SSGLGLATAK ALAETGKWHV IMACRDFLKA ERAAQSAGMP KDSYTVMHLD LASLDSVRQF VDNFRRAEMP LDVLVCNAAV YQPTANQPTF TAEGFELSVG
201: INHLGHFLLS RLLIDDLKNS DYPSKRLIIV GSITGNTNTL AGNVPPKANL GDLRGLAGGL NGLNSSAMID GGDFVGAKAY KDSKVCNMLT MQEFHRRFHE
301: DTGITFASLY PGCIATTGLF REHIPLFRTL FPPFQKYITK GYVSESEAGK RLAQVVADPS LTKSGVYWSW NKTSASFENQ LSQEASDVEK ARRVWEVSEK
401: LVGLA
Arabidopsis Description
PORAPORA [Source:UniProtKB/TrEMBL;Acc:A0A178UR02]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.