Factsheet for Zm00001d027353_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003071_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24050.1	Zm00001d003071_P001	AT1G20770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU93381	Sorghum	mitochondrion	90.86	92.39
Os03t0115700-01	Rice	mitochondrion	79.5	86.45
TraesCS4B01G358400.1	Wheat	mitochondrion	78.95	85.59
TraesCS4D01G351800.1	Wheat	mitochondrion	78.67	85.03
TraesCS5A01G527400.1	Wheat	mitochondrion	78.39	84.98
TraesCS5A01G527300.1	Wheat	mitochondrion	78.95	83.82
TraesCS4B01G358200.1	Wheat	mitochondrion, plastid	77.29	83.78
TraesCS4B01G358500.1	Wheat	mitochondrion	79.78	83.72
HORVU4Hr1G086380.1	Barley	mitochondrion, plastid	78.12	81.5
TraesCS4D01G351700.1	Wheat	mitochondrion, plastid	78.39	80.4
TraesCS4B01G358300.1	Wheat	plastid	65.65	75.96
GSMUA_Achr8P11870_001	Banana	cytosol	67.59	71.76
VIT_02s0025g02190.t01	Wine grape	cytosol	63.43	68.15
GSMUA_Achr11P...	Banana	cytosol	64.82	67.83
KRH41377	Soybean	cytosol	63.16	67.66
CDY53896	Canola	plastid	36.84	66.5
PGSC0003DMT400031933	Potato	cytosol	62.05	66.47
Zm00001d045495_P001	Maize	mitochondrion	66.2	66.2
Solyc08g082870.2.1	Tomato	cytosol	61.22	65.58
AT4G24050.1	Thale cress	cytosol	59.28	64.46
CDY72311	Canola	cytosol	36.01	64.36
CDY72089	Canola	cytosol	35.73	64.18
Bra019248.1-P	Field mustard	cytosol	59.0	64.16
AT1G64590.1	Thale cress	plastid	58.73	63.47
Bra013757.1-P	Field mustard	cytosol	57.89	62.95
CDY10985	Canola	cytosol	57.89	62.95
CDX76323	Canola	cytosol	57.62	62.65
Bra027706.1-P	Field mustard	plastid	59.0	61.56
CDY50440	Canola	mitochondrion	57.62	61.36
CDY53433	Canola	plastid	58.73	60.92
Bra027725.1-P	Field mustard	plastid	58.45	59.6
Zm00001d039848_P002	Maize	cytosol, mitochondrion, plastid	43.77	49.38
Zm00001d047150_P003	Maize	plastid	40.72	46.67
Zm00001d053067_P001	Maize	plastid	44.32	43.6
Zm00001d029840_P003	Maize	plastid	40.17	43.41
Zm00001d019754_P001	Maize	mitochondrion, plastid	41.55	42.49
Zm00001d025129_P001	Maize	mitochondrion	25.48	39.15
Zm00001d039397_P001	Maize	cytosol	25.76	38.27
CDY08387	Canola	cytosol, nucleus, plastid	59.83	24.24
CDY47833	Canola	cytosol, nucleus, plastid	59.56	24.13
Zm00001d054039_P001	Maize	cytosol	27.42	23.8
Zm00001d001820_P001	Maize	plastid	24.93	23.26
Zm00001d013937_P001	Maize	plastid	25.21	22.98
Zm00001d032576_P001	Maize	plastid	24.93	22.73
Zm00001d014994_P001	Maize	cytosol	27.42	20.8
Bra027724.1-P	Field mustard	cytosol, plastid	1.39	0.91

Protein Annotations

EMBL:EU974448	EnsemblPlants:Zm00001d027353_P001	EnsemblPlants:Zm00001d027353_T001	EnsemblPlantsGene:Zm00001d027353	EntrezGene:100285880	Gene3D:3.40.50.720
InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	PANTHER:PTHR24320	PANTHER:PTHR24320:SF114	PFAM:PF00106	PRINTS:PR00080
PRINTS:PR00081	ProteinID:ONL92922.1	SEG:seg	SUPFAM:SSF51735	UniParc:UPI000182EE59	UniProt:B6UB33
MapMan:35.1	:	:	:	:	:

Description

Retinol dehydrogenase 12

Coordinates

chr1:-:3495121..3497148

Molecular Weight (calculated)

38255.0 Da

IEP (calculated)

9.844

GRAVY (calculated)

0.061

Length

361 amino acids

Sequence
(BLAST)

001: MLRAARYLLG SPGASGFGSR STAEEVTPDL GATTAIITGA TSGIGAETAR VLAKRGARVV IPARSAKAAE DVRARIVAEC PAAAVLVLPL DLSSLASVRA
101: FADRFLALGL PLHLLINNAG KFSHGQLALS EDGVEMTFAT NYLGHFLLTK LLAGRMAETA AATGVQGRIV NVSSSVHGWF AGDWAEYLHL VTRRKIPYDA
201: TQAYAVSKLA NVLHTRELAA RLQEMGANVT ANCVHPGIVR TRLNRDRDGV LTDLVFLLLS KLLKTIPQAA ATTCYVAAHP RVAGVSGRYF ADCNEALPSP
301: AATDRHEAAR LWRVSEAIID GCTNSQPQRD CTTAPLPRLL PAQTQSQSPT GASSSPRRRA C

Best Arabidopsis Sequence Match ( AT4G24050.1 )
(BLAST)

001: MIETGKYLLG AAGASGFGSK STAEEVTENC DLRSITAVIT GATSGIGAET ARVLAKRGAR LIFPARNVKA AEEAKERIVS EFPETEIVVM KLDLSSIASV
101: RNFVADFESL DLPLNLLINN AGKLAHEHAI SEDGIEMTFA TNYLGHFLLT NLLLNKMIQT AEETGVQGRI VNVTSGIHGW FSGDLIEYLR LISQPKCQFD
201: ATRAYALSKL ANVLHTKELS SRLQKIGANV TVNCVHPGVV RTRLTRDREG LLTDLVFFLA SKLVKTVPQA AATTCYVATN PRLVNVSGKY FTDCNETTPS
301: GLGTNSSEAT KLWAASEILV TQHSKTSFDP CS

Arabidopsis Description

AT4g24050/T19F6_40 [Source:UniProtKB/TrEMBL;Acc:O22985]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.