Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- plastid 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os04t0509200-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G24050.1 | Os04t0509200-01 | AT1G20770.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G358400.1 | Wheat | mitochondrion | 86.14 | 85.89 |
| TraesCS5A01G527400.1 | Wheat | mitochondrion | 85.84 | 85.59 |
| TraesCS4D01G351800.1 | Wheat | mitochondrion | 85.54 | 85.03 |
| TraesCS4B01G358200.1 | Wheat | mitochondrion, plastid | 84.34 | 84.08 |
| TraesCS5A01G527300.1 | Wheat | mitochondrion | 85.84 | 83.82 |
| TraesCS4B01G358500.1 | Wheat | mitochondrion | 86.75 | 83.72 |
| HORVU4Hr1G086380.1 | Barley | mitochondrion, plastid | 85.24 | 81.79 |
| OQU93381 | Sorghum | mitochondrion | 87.35 | 81.69 |
| TraesCS4D01G351700.1 | Wheat | mitochondrion, plastid | 84.94 | 80.11 |
| Zm00001d027353_P001 | Maize | mitochondrion | 86.45 | 79.5 |
| TraesCS4B01G358300.1 | Wheat | plastid | 72.29 | 76.92 |
| GSMUA_Achr8P11870_001 | Banana | cytosol | 73.49 | 71.76 |
| VIT_02s0025g02190.t01 | Wine grape | cytosol | 70.78 | 69.94 |
| KRH41377 | Soybean | cytosol | 68.98 | 67.95 |
| PGSC0003DMT400031933 | Potato | cytosol | 68.67 | 67.66 |
| Os06t0129100-01 | Rice | mitochondrion | 71.69 | 67.42 |
| Solyc08g082870.2.1 | Tomato | cytosol | 68.37 | 67.36 |
| CDY53896 | Canola | plastid | 40.36 | 67.0 |
| GSMUA_Achr11P... | Banana | cytosol | 69.28 | 66.67 |
| AT4G24050.1 | Thale cress | cytosol | 66.27 | 66.27 |
| Bra019248.1-P | Field mustard | cytosol | 64.46 | 64.46 |
| AT1G64590.1 | Thale cress | plastid | 64.76 | 64.37 |
| CDY72311 | Canola | cytosol | 38.86 | 63.86 |
| Bra013757.1-P | Field mustard | cytosol | 63.55 | 63.55 |
| CDX76323 | Canola | cytosol | 63.25 | 63.25 |
| CDY10985 | Canola | cytosol | 63.25 | 63.25 |
| CDY72089 | Canola | cytosol | 38.25 | 63.18 |
| Bra027706.1-P | Field mustard | plastid | 64.76 | 62.14 |
| CDY50440 | Canola | mitochondrion | 62.95 | 61.65 |
| CDY53433 | Canola | plastid | 64.46 | 61.49 |
| Bra027725.1-P | Field mustard | plastid | 64.16 | 60.17 |
| Os01t0151700-01 | Rice | cytosol | 50.0 | 51.71 |
| Os10t0547900-01 | Rice | cytosol | 44.58 | 47.13 |
| Os10t0548000-02 | Rice | cytosol, peroxisome, plastid | 44.28 | 46.08 |
| Os11t0181700-02 | Rice | cytosol, mitochondrion | 45.48 | 45.48 |
| Os09t0570300-01 | Rice | plasma membrane | 43.07 | 45.25 |
| Os11t0181800-01 | Rice | plasma membrane | 44.58 | 44.98 |
| Os04t0291100-01 | Rice | mitochondrion | 40.66 | 42.99 |
| Os02t0116500-01 | Rice | cytosol | 29.52 | 24.5 |
| CDY08387 | Canola | cytosol, nucleus, plastid | 64.16 | 23.91 |
| CDY47833 | Canola | cytosol, nucleus, plastid | 63.55 | 23.68 |
| Os04t0678700-01 | Rice | plastid | 26.81 | 23.0 |
| Os10t0496900-02 | Rice | plastid | 26.81 | 22.14 |
| Bra027724.1-P | Field mustard | cytosol, plastid | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.40.50.720 | MapMan:35.1 | EntrezGene:4331397 | ProteinID:AAO17035.1 | ProteinID:ABF93646.1 | EMBL:AK067473 |
| ProteinID:BAF10668.1 | ProteinID:BAS81973.1 | ProteinID:EAZ25353.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016491 | GO:GO:0055114 | InterPro:NAD(P)-bd_dom_sf | EnsemblPlantsGene:Os03g0115700 | EnsemblPlants:Os03t0115700-01 |
| PFAM:PF00106 | PRINTS:PR00080 | PRINTS:PR00081 | PANTHER:PTHR24320 | PANTHER:PTHR24320:SF114 | UniProt:Q8GZV9 |
| InterPro:SDR_fam | SUPFAM:SSF51735 | UniParc:UPI00000ADC94 | RefSeq:XP_015633346.1 | SEG:seg | : |
Description
Short-chain dehydrogenase/reductase SDR family protein. (Os03t0115700-01)
Coordinates
chr3:-:884706..886943
Molecular Weight (calculated)
35535.0 Da
IEP (calculated)
9.254
GRAVY (calculated)
0.108
Length
332 amino acids
Sequence
(BLAST)
(BLAST)
001: MLRAAKYLLG SPGANGFGSK STAEDVCPDL GCITAIITGA TSGIGAETAR VLAKRGARVV IPARNVKAAE DMRARIRGEC PGADVLVLPL DLSSLASVRA
101: FADRFLSLGL PLHLLINNAG KFSHGQLALS EDGVEMTFAT NYLGHFLLTK LLLGRMAETA AATGVQGRIV NVSSSVHSWF AGDWAEYLDL VTRRKIAYDA
201: TQAYAVSKLA NVLHTKELAV RLKEMGANVT VNCVHPGIVR TRLNRDRDGL VTDLVFLLLS KLLKTIPQAA ATTCYVAAHP RLAGVSGRYF ADCNEALPSP
301: AATNRHEAER LWQISESMLL CTNRHSKDAS AP
101: FADRFLSLGL PLHLLINNAG KFSHGQLALS EDGVEMTFAT NYLGHFLLTK LLLGRMAETA AATGVQGRIV NVSSSVHSWF AGDWAEYLDL VTRRKIAYDA
201: TQAYAVSKLA NVLHTKELAV RLKEMGANVT VNCVHPGIVR TRLNRDRDGL VTDLVFLLLS KLLKTIPQAA ATTCYVAAHP RLAGVSGRYF ADCNEALPSP
301: AATNRHEAER LWQISESMLL CTNRHSKDAS AP
001: MIETGKYLLG AAGASGFGSK STAEEVTENC DLRSITAVIT GATSGIGAET ARVLAKRGAR LIFPARNVKA AEEAKERIVS EFPETEIVVM KLDLSSIASV
101: RNFVADFESL DLPLNLLINN AGKLAHEHAI SEDGIEMTFA TNYLGHFLLT NLLLNKMIQT AEETGVQGRI VNVTSGIHGW FSGDLIEYLR LISQPKCQFD
201: ATRAYALSKL ANVLHTKELS SRLQKIGANV TVNCVHPGVV RTRLTRDREG LLTDLVFFLA SKLVKTVPQA AATTCYVATN PRLVNVSGKY FTDCNETTPS
301: GLGTNSSEAT KLWAASEILV TQHSKTSFDP CS
101: RNFVADFESL DLPLNLLINN AGKLAHEHAI SEDGIEMTFA TNYLGHFLLT NLLLNKMIQT AEETGVQGRI VNVTSGIHGW FSGDLIEYLR LISQPKCQFD
201: ATRAYALSKL ANVLHTKELS SRLQKIGANV TVNCVHPGVV RTRLTRDREG LLTDLVFFLA SKLVKTVPQA AATTCYVATN PRLVNVSGKY FTDCNETTPS
301: GLGTNSSEAT KLWAASEILV TQHSKTSFDP CS
Arabidopsis Description
AT4g24050/T19F6_40 [Source:UniProtKB/TrEMBL;Acc:O22985]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.