Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G362600.1 | Wheat | nucleus | 69.6 | 69.91 |
| HORVU2Hr1G088210.1 | Barley | cytosol, nucleus, plastid | 69.6 | 69.6 |
| TraesCS2A01G364600.1 | Wheat | cytosol | 69.16 | 69.16 |
| TraesCS2B01G383200.1 | Wheat | nucleus | 68.72 | 68.72 |
| TraesCS1D01G288900.1 | Wheat | nucleus | 66.52 | 68.02 |
| TraesCS1A01G290300.1 | Wheat | cytosol | 67.4 | 67.11 |
| OQU81934 | Sorghum | cytosol | 63.88 | 64.44 |
| Zm00001d003071_P001 | Maize | cytosol | 62.56 | 62.83 |
| GSMUA_Achr1P03500_001 | Banana | nucleus | 44.93 | 46.36 |
| CDY33645 | Canola | nucleus | 43.17 | 45.79 |
| Bra016454.1-P | Field mustard | cytosol | 43.17 | 45.79 |
| TraesCS1B01G299500.1 | Wheat | plasma membrane | 57.71 | 45.02 |
| CDY01355 | Canola | cytosol | 42.73 | 44.29 |
| Bra012248.1-P | Field mustard | cytosol | 42.73 | 44.29 |
| AT1G20770.1 | Thale cress | nucleus | 41.85 | 44.19 |
| CDY31868 | Canola | cytosol | 42.29 | 43.84 |
| CDX96624 | Canola | nucleus | 37.0 | 43.75 |
| KRG95442 | Soybean | cytosol | 26.87 | 42.96 |
| VIT_18s0122g01060.t01 | Wine grape | nucleus | 41.85 | 41.3 |
| PGSC0003DMT400003346 | Potato | nucleus | 38.77 | 40.37 |
| KRH67118 | Soybean | nucleus | 34.8 | 38.54 |
| Solyc02g087940.2.1 | Tomato | nucleus | 29.96 | 36.96 |
Protein Annotations
| MapMan:35.2 | EntrezGene:4336361 | EMBL:AK069997 | ProteinID:BAF15191.1 | ProteinID:BAS90021.1 | ProteinID:CAE03361.1 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0016020 | GO:GO:0042406 | GO:GO:0051082 | EnsemblPlantsGene:Os04g0509200 |
| EnsemblPlants:Os04t0509200-01 | PANTHER:PTHR31996 | UniProt:Q7XQ15 | UniParc:UPI00001B16C8 | RefSeq:XP_015636002.1 | SEG:seg |
Description
Similar to OSIGBa0157K09-H0214G12.1 protein. (Os04t0509200-01)
Coordinates
chr4:-:25468673..25471511
Molecular Weight (calculated)
24324.2 Da
IEP (calculated)
4.671
GRAVY (calculated)
-0.413
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAATEEQLR ITGSVVPGVG EVEEVDEATE GGRLGRGDDD EILRFMDSVD GYLLLMDSLS SVLRPGWLDL ASARHSMGTS RVSSTLFDHK EQSAASKLQV
101: VDSADSQSSE PNPHFILSKW CLQEKSNSND AVGVRDTTKP KLRYRGSAAT PDGSHDSDAT PAESATSVDT SSHVQKARSK ALSTFGALVS PKLRSAQMSF
201: ETALELIVEL ANSRSDMLSS FSQIKGE
101: VDSADSQSSE PNPHFILSKW CLQEKSNSND AVGVRDTTKP KLRYRGSAAT PDGSHDSDAT PAESATSVDT SSHVQKARSK ALSTFGALVS PKLRSAQMSF
201: ETALELIVEL ANSRSDMLSS FSQIKGE
001: MAEIYEEGDE SVDVNKESEV KTELGKGGGD ENVLQFLDSL DGYLTLMDSV NSKLREGWFD LASARHSMGT LRINSTLLDL KYHPASSTLQ VTDQDVESLG
101: SVPHFALSKW ASKGGSRKGK DFSTDTDSEI GSPLSPQLRH RGVSEEKPSA KDETVLAADE EIKKERAKSL SVFGGLVSPK LRGAQQSFET ALETLVEIAN
201: MRASMISAFE RITEK
101: SVPHFALSKW ASKGGSRKGK DFSTDTDSEI GSPLSPQLRH RGVSEEKPSA KDETVLAADE EIKKERAKSL SVFGGLVSPK LRGAQQSFET ALETLVEIAN
201: MRASMISAFE RITEK
Arabidopsis Description
At1g20770 [Source:UniProtKB/TrEMBL;Acc:Q9LM77]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.