Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_18s0122g01060.t01 | Wine grape | nucleus | 54.55 | 52.17 |
| TraesCS1D01G288900.1 | Wheat | nucleus | 49.55 | 49.1 |
| HORVU2Hr1G088210.1 | Barley | cytosol, nucleus, plastid | 50.45 | 48.9 |
| TraesCS2A01G364600.1 | Wheat | cytosol | 50.0 | 48.46 |
| TraesCS1A01G290300.1 | Wheat | cytosol | 49.09 | 47.37 |
| TraesCS2D01G362600.1 | Wheat | nucleus | 48.64 | 47.35 |
| TraesCS2B01G383200.1 | Wheat | nucleus | 48.64 | 47.14 |
| KRG95442 | Soybean | cytosol | 29.55 | 45.77 |
| Bra012248.1-P | Field mustard | cytosol | 45.45 | 45.66 |
| CDY01355 | Canola | cytosol | 45.45 | 45.66 |
| CDY31868 | Canola | cytosol | 45.45 | 45.66 |
| OQU81934 | Sorghum | cytosol | 46.36 | 45.33 |
| Os04t0509200-01 | Rice | cytosol | 46.36 | 44.93 |
| CDY33645 | Canola | nucleus | 43.64 | 44.86 |
| Zm00001d003071_P001 | Maize | cytosol | 45.45 | 44.25 |
| Bra016454.1-P | Field mustard | cytosol | 42.73 | 43.93 |
| AT1G20770.1 | Thale cress | nucleus | 42.73 | 43.72 |
| PGSC0003DMT400003346 | Potato | nucleus | 41.82 | 42.2 |
| CDX96624 | Canola | nucleus | 36.36 | 41.67 |
| KRH67118 | Soybean | nucleus | 38.18 | 40.98 |
| Solyc02g087940.2.1 | Tomato | nucleus | 28.18 | 33.7 |
| TraesCS1B01G299500.1 | Wheat | plasma membrane | 44.55 | 33.68 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P03500_001 | EnsemblPlants:GSMUA_Achr1T03500_001 | EnsemblPlantsGene:GSMUA_Achr1G03500_001 | PANTHER:PTHR31996 | SEG:seg | UniParc:UPI0002954358 |
| UniProt:M0RWQ8 | MapMan:35.2 | : | : | : | : |
Description
Putative Coiled-coil domain-containing protein 115 [Source:GMGC_GENE;Acc:GSMUA_Achr1G03500_001]
Coordinates
chr1:-:2895137..2897435
Molecular Weight (calculated)
24227.1 Da
IEP (calculated)
5.153
GRAVY (calculated)
-0.556
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDDDRCSSS NPGGIGQEEE DEDGKVLRFL DSLDSYLTLL DALSSTLRQG WFELASARHS MGSSRISSVL LDQKVQSAAT TFQVRKSIDG SPSESHPSFA
101: ISKWASSRNG KCSFRELEVS RVQKTSKNSE LRHRGSSNFY DTTEEHDLTI NASSTISDSD VQKERSKSLS VFGTLVSPKL RGAQVSFETA LDAIVEIANI
201: RSSMLSAFTQ LQQEMKKDLG
101: ISKWASSRNG KCSFRELEVS RVQKTSKNSE LRHRGSSNFY DTTEEHDLTI NASSTISDSD VQKERSKSLS VFGTLVSPKL RGAQVSFETA LDAIVEIANI
201: RSSMLSAFTQ LQQEMKKDLG
001: MAEIYEEGDE SVDVNKESEV KTELGKGGGD ENVLQFLDSL DGYLTLMDSV NSKLREGWFD LASARHSMGT LRINSTLLDL KYHPASSTLQ VTDQDVESLG
101: SVPHFALSKW ASKGGSRKGK DFSTDTDSEI GSPLSPQLRH RGVSEEKPSA KDETVLAADE EIKKERAKSL SVFGGLVSPK LRGAQQSFET ALETLVEIAN
201: MRASMISAFE RITEK
101: SVPHFALSKW ASKGGSRKGK DFSTDTDSEI GSPLSPQLRH RGVSEEKPSA KDETVLAADE EIKKERAKSL SVFGGLVSPK LRGAQQSFET ALETLVEIAN
201: MRASMISAFE RITEK
Arabidopsis Description
At1g20770 [Source:UniProtKB/TrEMBL;Acc:Q9LM77]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.