Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012248.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDY31868 | Canola | cytosol | 93.15 | 93.15 |
| CDY33645 | Canola | nucleus | 81.74 | 83.64 |
| AT1G20770.1 | Thale cress | nucleus | 79.45 | 80.93 |
| CDX96624 | Canola | nucleus | 68.49 | 78.12 |
| KRG95442 | Soybean | cytosol | 33.33 | 51.41 |
| Zm00001d003071_P001 | Maize | cytosol | 47.03 | 45.58 |
| GSMUA_Achr1P03500_001 | Banana | nucleus | 45.66 | 45.45 |
| KRH67118 | Soybean | nucleus | 41.55 | 44.39 |
| VIT_18s0122g01060.t01 | Wine grape | nucleus | 46.12 | 43.91 |
| OQU81934 | Sorghum | cytosol | 44.75 | 43.56 |
| Os04t0509200-01 | Rice | cytosol | 44.29 | 42.73 |
| HORVU2Hr1G088210.1 | Barley | cytosol, nucleus, plastid | 43.84 | 42.29 |
| TraesCS2D01G362600.1 | Wheat | nucleus | 42.92 | 41.59 |
| TraesCS2B01G383200.1 | Wheat | nucleus | 42.92 | 41.41 |
| TraesCS2A01G364600.1 | Wheat | cytosol | 42.47 | 40.97 |
| PGSC0003DMT400003346 | Potato | nucleus | 40.64 | 40.83 |
| TraesCS1D01G288900.1 | Wheat | nucleus | 41.1 | 40.54 |
| TraesCS1A01G290300.1 | Wheat | cytosol | 42.01 | 40.35 |
| Solyc02g087940.2.1 | Tomato | nucleus | 29.68 | 35.33 |
| TraesCS1B01G299500.1 | Wheat | plasma membrane | 35.62 | 26.8 |
Protein Annotations
| EnsemblPlants:CDY01355 | EnsemblPlantsGene:GSBRNA2T00112329001 | PANTHER:PTHR31996 | ProteinID:CDY01355 | ProteinID:CDY01355.1 | SEG:seg |
| UniParc:UPI0002541589 | MapMan:35.2 | : | : | : | : |
Description
BnaA07g11280D
Coordinates
chrLK031926:+:488464..489921
Molecular Weight (calculated)
23774.8 Da
IEP (calculated)
4.501
GRAVY (calculated)
-0.505
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGDEGTEVY EEGEDSIDVN NEVELEKEGG GGDEKVLQFL DSLDEYLTLM DSLNSKLRDG WFDLASARHS MGTLRINSTL LDLKFHPAAS TLQVTEQDVE
101: SLGSVPRFAL SKWASKGGSG KGKDFSTDAG SEIGSPRTPQ LRHRGGVSEE KPSAMGETVL AADEEVKRER EKSLSVFGGL VSPKLRGAQL SFETALETLV
201: EIANTRSSML TAFERITKK
101: SLGSVPRFAL SKWASKGGSG KGKDFSTDAG SEIGSPRTPQ LRHRGGVSEE KPSAMGETVL AADEEVKRER EKSLSVFGGL VSPKLRGAQL SFETALETLV
201: EIANTRSSML TAFERITKK
001: MAEIYEEGDE SVDVNKESEV KTELGKGGGD ENVLQFLDSL DGYLTLMDSV NSKLREGWFD LASARHSMGT LRINSTLLDL KYHPASSTLQ VTDQDVESLG
101: SVPHFALSKW ASKGGSRKGK DFSTDTDSEI GSPLSPQLRH RGVSEEKPSA KDETVLAADE EIKKERAKSL SVFGGLVSPK LRGAQQSFET ALETLVEIAN
201: MRASMISAFE RITEK
101: SVPHFALSKW ASKGGSRKGK DFSTDTDSEI GSPLSPQLRH RGVSEEKPSA KDETVLAADE EIKKERAKSL SVFGGLVSPK LRGAQQSFET ALETLVEIAN
201: MRASMISAFE RITEK
Arabidopsis Description
At1g20770 [Source:UniProtKB/TrEMBL;Acc:Q9LM77]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.