CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX96624
CDY01355
CDY31868
CDY33645
CDY39879

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02620.1	CDX96624	AT1G20770.1	21798944
AT4G02620.1	CDY01355	AT1G20770.1	21798944
AT4G02620.1	CDY31868	AT1G20770.1	21798944
AT4G02620.1	CDY33645	AT1G20770.1	21798944
AT4G02620.1	CDY39879	AT2G25000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036253.1-P	Field mustard	cytosol	100.0	100.0
CDX90929	Canola	cytosol	100.0	100.0
CDY21901	Canola	cytosol	100.0	100.0
CDY18010	Canola	cytosol	99.22	99.22
AT4G02620.1	Thale cress	cytosol	96.88	96.88
CDX91295	Canola	endoplasmic reticulum	99.22	90.07
VIT_05s0062g00210.t01	Wine grape	cytosol	87.5	86.15
Solyc02g068450.2.1	Tomato	cytosol, plastid	76.56	85.96
KRH42449	Soybean	cytosol	86.72	85.38
KRH58554	Soybean	cytosol	86.72	85.38
GSMUA_Achr1P15220_001	Banana	cytosol	85.94	84.62
EES06054	Sorghum	cytosol	85.94	84.62
EER97697	Sorghum	cytosol	85.94	84.62
PGSC0003DMT400024361	Potato	cytosol	85.16	83.85
Zm00001d007118_P003	Maize	cytosol	85.16	83.85
GSMUA_Achr1P17510_001	Banana	cytosol	84.38	83.08
Os02t0824700-01	Rice	nucleus, plasma membrane	84.38	83.08
Os04t0137500-00	Rice	cytosol	84.38	83.08
HORVU3Hr1G047510.1	Barley	vacuole	83.59	82.31
TraesCS3A01G201100.1	Wheat	unclear	83.59	82.31
TraesCS3B01G224800.1	Wheat	cytosol	83.59	82.31
TraesCS3D01G204000.1	Wheat	cytosol	83.59	82.31

Protein Annotations

MapMan:24.1.1.2.6	Gene3D:3.40.50.10580	GO:A0A078G931	UniProt:A0A078G931	InterPro:ATPase_V1-cplx_f_g_su	InterPro:ATPase_V1-cplx_fsu_euk
InterPro:ATPase_V1_fsu_sf	ProteinID:CDY21901.1	EnsemblPlants:CDY22067	ProteinID:CDY22067	ProteinID:CDY22067.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006811	GO:GO:0008150
GO:GO:0015991	GO:GO:0015992	GO:GO:0016020	GO:GO:0016787	GO:GO:0033180	GO:GO:0034220
GO:GO:0046961	EnsemblPlantsGene:GSBRNA2T00018449001	InterPro:IPR036906	PFAM:PF01990	PIRSF:PIRSF015945	PANTHER:PTHR13861
PANTHER:PTHR13861:SF6	SUPFAM:SSF159468	TIGRFAMs:TIGR01101	UniParc:UPI0001BA8DA8	:	:

Description

BnaA09g00960DV-type proton ATPase subunit F [Source:UniProtKB/TrEMBL;Acc:A0A078G931]

Coordinates

chrLK032127:-:414211..415822

Molecular Weight (calculated)

14248.1 Da

IEP (calculated)

6.531

GRAVY (calculated)

-0.007

Length

128 amino acids

Sequence
(BLAST)

001: MAGRASIPAR NSALIAMIAD EDTVVGFLMA GVGNVDIRRK TNYLIVDSKT TVRQIEDAFK EFSSRDDIAI ILISQYVANM IRFLVDSYNK PVPAILEIPS
101: KDHPYDPAHD SVLSRVKYLF SAESVSQR

Best Arabidopsis Sequence Match ( AT4G02620.1 )
(BLAST)

001: MAGRATIPAR NSALIAMIAD EDTVVGFLMA GVGNVDIRRK TNYLIVDSKT TVRQIEDAFK EFSARDDIAI ILLSQYIANM IRFLVDSYNK PVPAILEIPS
101: KDHPYDPAHD SVLSRVKYLF SAESVSQR

Arabidopsis Description

VHA-FV-type proton ATPase subunit F [Source:UniProtKB/TrEMBL;Acc:A0A178V4M8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.