Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY01355 | Canola | cytosol | 93.15 | 93.15 |
| CDY33645 | Canola | nucleus | 81.28 | 83.18 |
| AT1G20770.1 | Thale cress | nucleus | 78.54 | 80.0 |
| CDX96624 | Canola | nucleus | 69.41 | 79.17 |
| KRG95442 | Soybean | cytosol | 33.79 | 52.11 |
| GSMUA_Achr1P03500_001 | Banana | nucleus | 45.66 | 45.45 |
| KRH67118 | Soybean | nucleus | 42.01 | 44.88 |
| Zm00001d003071_P001 | Maize | cytosol | 45.66 | 44.25 |
| VIT_18s0122g01060.t01 | Wine grape | nucleus | 46.12 | 43.91 |
| OQU81934 | Sorghum | cytosol | 44.29 | 43.11 |
| Os04t0509200-01 | Rice | cytosol | 43.84 | 42.29 |
| HORVU2Hr1G088210.1 | Barley | cytosol, nucleus, plastid | 43.84 | 42.29 |
| PGSC0003DMT400003346 | Potato | nucleus | 41.55 | 41.74 |
| TraesCS2D01G362600.1 | Wheat | nucleus | 42.92 | 41.59 |
| TraesCS1D01G288900.1 | Wheat | nucleus | 41.1 | 40.54 |
| TraesCS2A01G364600.1 | Wheat | cytosol | 42.01 | 40.53 |
| TraesCS1A01G290300.1 | Wheat | cytosol | 42.01 | 40.35 |
| TraesCS2B01G383200.1 | Wheat | nucleus | 41.55 | 40.09 |
| Solyc02g087940.2.1 | Tomato | nucleus | 31.05 | 36.96 |
| TraesCS1B01G299500.1 | Wheat | plasma membrane | 36.53 | 27.49 |
Protein Annotations
| EnsemblPlants:CDY31868 | EnsemblPlantsGene:GSBRNA2T00050603001 | PANTHER:PTHR31996 | ProteinID:CDY31868 | ProteinID:CDY31868.1 | SEG:seg |
| UniParc:UPI0004EDB191 | UniProt:A0A078H4T8 | MapMan:35.2 | : | : | : |
Description
BnaC07g15180DBnaC07g15180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H4T8]
Coordinates
chrLK032281:+:209959..211672
Molecular Weight (calculated)
23697.7 Da
IEP (calculated)
4.556
GRAVY (calculated)
-0.468
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGDEGTEIY EEGGDSIDVN NEVELEKEGA GRDEKVLDFL DSLDEYLTLM DSLSSKLREG WFDLASARHS MGTLRINSTL LDLKFHPAAS TLQVTEQDVE
101: ALGSVPRFAL SKWASKGGSG KGKDSSIDAD SEAGSPRSPQ LRHRGGVSEE KPSAMGETVL AADEEIKRER AKSLSVFGGL VSPKLRGAQL SFETALETLV
201: EIANTRSSML TAFERITKK
101: ALGSVPRFAL SKWASKGGSG KGKDSSIDAD SEAGSPRSPQ LRHRGGVSEE KPSAMGETVL AADEEIKRER AKSLSVFGGL VSPKLRGAQL SFETALETLV
201: EIANTRSSML TAFERITKK
001: MAEIYEEGDE SVDVNKESEV KTELGKGGGD ENVLQFLDSL DGYLTLMDSV NSKLREGWFD LASARHSMGT LRINSTLLDL KYHPASSTLQ VTDQDVESLG
101: SVPHFALSKW ASKGGSRKGK DFSTDTDSEI GSPLSPQLRH RGVSEEKPSA KDETVLAADE EIKKERAKSL SVFGGLVSPK LRGAQQSFET ALETLVEIAN
201: MRASMISAFE RITEK
101: SVPHFALSKW ASKGGSRKGK DFSTDTDSEI GSPLSPQLRH RGVSEEKPSA KDETVLAADE EIKKERAKSL SVFGGLVSPK LRGAQQSFET ALETLVEIAN
201: MRASMISAFE RITEK
Arabidopsis Description
At1g20770 [Source:UniProtKB/TrEMBL;Acc:Q9LM77]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.