Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400024361 | |
| PGSC0003DMT400031933 | |
| PGSC0003DMT400067640 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G20770.1 | PGSC0003DMT400024361 | AT4G02620.1 | 21798944 |
| AT1G20770.1 | PGSC0003DMT400031933 | AT4G24050.1 | 21798944 |
| AT1G20770.1 | PGSC0003DMT400067640 | AT4G24840.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g087940.2.1 | Tomato | nucleus | 51.83 | 61.41 |
| KRG95442 | Soybean | cytosol | 30.73 | 47.18 |
| VIT_18s0122g01060.t01 | Wine grape | nucleus | 46.33 | 43.91 |
| AT1G20770.1 | Thale cress | nucleus | 41.74 | 42.33 |
| Bra016454.1-P | Field mustard | cytosol | 41.28 | 42.06 |
| CDY33645 | Canola | nucleus | 41.28 | 42.06 |
| GSMUA_Achr1P03500_001 | Banana | nucleus | 42.2 | 41.82 |
| CDY31868 | Canola | cytosol | 41.74 | 41.55 |
| HORVU2Hr1G088210.1 | Barley | cytosol, nucleus, plastid | 43.12 | 41.41 |
| TraesCS2A01G364600.1 | Wheat | cytosol | 42.66 | 40.97 |
| TraesCS2B01G383200.1 | Wheat | nucleus | 42.66 | 40.97 |
| TraesCS2D01G362600.1 | Wheat | nucleus | 42.2 | 40.71 |
| CDY01355 | Canola | cytosol | 40.83 | 40.64 |
| Bra012248.1-P | Field mustard | cytosol | 40.83 | 40.64 |
| CDX96624 | Canola | nucleus | 35.78 | 40.62 |
| KRH67118 | Soybean | nucleus | 38.07 | 40.49 |
| OQU81934 | Sorghum | cytosol | 40.83 | 39.56 |
| Zm00001d003071_P001 | Maize | cytosol | 40.37 | 38.94 |
| Os04t0509200-01 | Rice | cytosol | 40.37 | 38.77 |
| TraesCS1D01G288900.1 | Wheat | nucleus | 38.99 | 38.29 |
| TraesCS1A01G290300.1 | Wheat | cytosol | 39.45 | 37.72 |
| TraesCS1B01G299500.1 | Wheat | plasma membrane | 37.16 | 27.84 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400003346 | EnsemblPlantsGene:PGSC0003DMG400001324 | EntrezGene:102584984 | ncoils:Coil | PANTHER:PTHR31996 | PGSC:PGSC0003DMG400001324 |
| RefSeq:XP_006338453.1 | SEG:seg | UniParc:UPI000296D1D4 | UniProt:M0ZLH5 | MapMan:35.2 | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400001324]
Coordinates
chr2:-:46246193..46250316
Molecular Weight (calculated)
24125.9 Da
IEP (calculated)
4.613
GRAVY (calculated)
-0.645
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: MVNEENSEMQ SSYNEKDKIV LELMDSTDSY LLLMNSLSSS LREGWLELAS ARHSMGASRI SSALFDLKSH SAATTLQLNH QDAGPKSEES HFSLCKWASS
101: ESPKSCSEEA KFEEDKLLQK KSNSPKVLNQ DGSSNSEVLE EASEVPEATE SPRTVEDQAR KERLKSLSVF GVLVCPKLRA AQSSFETALE TLVEVANKRA
201: DLLNAYDQVR EKTESATN
101: ESPKSCSEEA KFEEDKLLQK KSNSPKVLNQ DGSSNSEVLE EASEVPEATE SPRTVEDQAR KERLKSLSVF GVLVCPKLRA AQSSFETALE TLVEVANKRA
201: DLLNAYDQVR EKTESATN
001: MAEIYEEGDE SVDVNKESEV KTELGKGGGD ENVLQFLDSL DGYLTLMDSV NSKLREGWFD LASARHSMGT LRINSTLLDL KYHPASSTLQ VTDQDVESLG
101: SVPHFALSKW ASKGGSRKGK DFSTDTDSEI GSPLSPQLRH RGVSEEKPSA KDETVLAADE EIKKERAKSL SVFGGLVSPK LRGAQQSFET ALETLVEIAN
201: MRASMISAFE RITEK
101: SVPHFALSKW ASKGGSRKGK DFSTDTDSEI GSPLSPQLRH RGVSEEKPSA KDETVLAADE EIKKERAKSL SVFGGLVSPK LRGAQQSFET ALETLVEIAN
201: MRASMISAFE RITEK
Arabidopsis Description
At1g20770 [Source:UniProtKB/TrEMBL;Acc:Q9LM77]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.