Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G290300.1 | Wheat | cytosol | 83.78 | 81.58 |
| TraesCS2D01G362600.1 | Wheat | nucleus | 77.03 | 75.66 |
| Os04t0509200-01 | Rice | cytosol | 68.02 | 66.52 |
| OQU81934 | Sorghum | cytosol | 62.61 | 61.78 |
| Zm00001d003071_P001 | Maize | cytosol | 61.71 | 60.62 |
| TraesCS1B01G299500.1 | Wheat | plasma membrane | 75.23 | 57.39 |
| GSMUA_Achr1P03500_001 | Banana | nucleus | 49.1 | 49.55 |
| KRG95442 | Soybean | cytosol | 28.38 | 44.37 |
| VIT_18s0122g01060.t01 | Wine grape | nucleus | 43.69 | 42.17 |
| Bra012248.1-P | Field mustard | cytosol | 40.54 | 41.1 |
| CDY31868 | Canola | cytosol | 40.54 | 41.1 |
| CDY01355 | Canola | cytosol | 40.54 | 41.1 |
| AT1G20770.1 | Thale cress | nucleus | 39.64 | 40.93 |
| CDY33645 | Canola | nucleus | 39.19 | 40.65 |
| Bra016454.1-P | Field mustard | cytosol | 38.74 | 40.19 |
| KRH67118 | Soybean | nucleus | 36.04 | 39.02 |
| PGSC0003DMT400003346 | Potato | nucleus | 38.29 | 38.99 |
| CDX96624 | Canola | nucleus | 32.88 | 38.02 |
| Solyc02g087940.2.1 | Tomato | nucleus | 30.18 | 36.41 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G288900.1 | EnsemblPlantsGene:TraesCS1D01G288900 | PANTHER:PTHR31996 | SEG:seg | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr1D:-:387193355..387198035
Molecular Weight (calculated)
24112.0 Da
IEP (calculated)
5.137
GRAVY (calculated)
-0.455
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAVPRHLGP DRRVEQVEDA TNAAAAEELG GDDEEILRFM DSADGYLLLM DSLSAALRQG WLDLASARHS MGASRVSSVL FDHKEQSAAT RLQVDYSADL
101: RPSESKPHFA LSKWCLQEES NSSDVVSAQD STKPKLRYRG SEATSDGSNE SDATTAKSST GVDICSQVQT ARSKALSMFS ALVSPKLRTT QVSFESALEQ
201: IVELANSRST MLSSFSQIKR RS
101: RPSESKPHFA LSKWCLQEES NSSDVVSAQD STKPKLRYRG SEATSDGSNE SDATTAKSST GVDICSQVQT ARSKALSMFS ALVSPKLRTT QVSFESALEQ
201: IVELANSRST MLSSFSQIKR RS
001: MAEIYEEGDE SVDVNKESEV KTELGKGGGD ENVLQFLDSL DGYLTLMDSV NSKLREGWFD LASARHSMGT LRINSTLLDL KYHPASSTLQ VTDQDVESLG
101: SVPHFALSKW ASKGGSRKGK DFSTDTDSEI GSPLSPQLRH RGVSGKKRLI CWLFSALCLS VFHHLLLYVI R
101: SVPHFALSKW ASKGGSRKGK DFSTDTDSEI GSPLSPQLRH RGVSGKKRLI CWLFSALCLS VFHHLLLYVI R
Arabidopsis Description
At1g20770 [Source:UniProtKB/TrEMBL;Acc:Q9LM77]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.