Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G351800.1 | Wheat | mitochondrion | 95.2 | 94.91 |
| TraesCS5A01G527400.1 | Wheat | mitochondrion | 94.89 | 94.89 |
| TraesCS4B01G358200.1 | Wheat | mitochondrion, plastid | 94.59 | 94.59 |
| TraesCS4B01G358500.1 | Wheat | mitochondrion | 96.7 | 93.6 |
| Os03t0115700-01 | Rice | mitochondrion | 85.89 | 86.14 |
| TraesCS4B01G358300.1 | Wheat | plastid | 78.68 | 83.97 |
| OQU93381 | Sorghum | mitochondrion | 86.49 | 81.13 |
| Zm00001d027353_P001 | Maize | mitochondrion | 85.59 | 78.95 |
| GSMUA_Achr8P11870_001 | Banana | cytosol | 74.17 | 72.65 |
| VIT_02s0025g02190.t01 | Wine grape | cytosol | 70.87 | 70.24 |
| CDY53896 | Canola | plastid | 42.04 | 70.0 |
| KRH41377 | Soybean | cytosol | 70.57 | 69.73 |
| PGSC0003DMT400031933 | Potato | cytosol | 69.37 | 68.55 |
| Solyc08g082870.2.1 | Tomato | cytosol | 69.07 | 68.25 |
| GSMUA_Achr11P... | Banana | cytosol | 69.67 | 67.25 |
| AT4G24050.1 | Thale cress | cytosol | 65.77 | 65.96 |
| CDY72311 | Canola | cytosol | 39.94 | 65.84 |
| Bra019248.1-P | Field mustard | cytosol | 65.47 | 65.66 |
| CDY72089 | Canola | cytosol | 39.34 | 65.17 |
| AT1G64590.1 | Thale cress | plastid | 64.86 | 64.67 |
| CDY10985 | Canola | cytosol | 64.26 | 64.46 |
| Bra013757.1-P | Field mustard | cytosol | 64.26 | 64.46 |
| CDX76323 | Canola | cytosol | 64.26 | 64.46 |
| Bra027706.1-P | Field mustard | plastid | 66.07 | 63.58 |
| CDY53433 | Canola | plastid | 65.77 | 62.93 |
| CDY50440 | Canola | mitochondrion | 63.96 | 62.83 |
| Bra027725.1-P | Field mustard | plastid | 65.17 | 61.3 |
| TraesCS5B01G461100.1 | Wheat | mitochondrion, plastid | 18.32 | 53.04 |
| TraesCS3B01G220800.1 | Wheat | mitochondrion, plastid | 18.32 | 53.04 |
| TraesCS3B01G091800.3 | Wheat | cytosol | 48.65 | 50.62 |
| TraesCS5B01G279400.1 | Wheat | plastid | 48.05 | 49.69 |
| TraesCS4B01G003400.1 | Wheat | plastid | 44.74 | 47.3 |
| TraesCS4B01G097100.1 | Wheat | mitochondrion | 45.65 | 47.06 |
| TraesCS4B01G002900.1 | Wheat | golgi | 44.14 | 46.52 |
| TraesCS1B01G221200.1 | Wheat | cytosol | 43.54 | 46.03 |
| CDY47833 | Canola | cytosol, nucleus, plastid | 64.86 | 24.24 |
| CDY08387 | Canola | cytosol, nucleus, plastid | 64.86 | 24.24 |
| TraesCS6B01G060600.1 | Wheat | cytosol | 28.83 | 23.36 |
| TraesCS2B01G593000.1 | Wheat | plastid | 26.73 | 22.94 |
| TraesCS1B01G186300.1 | Wheat | plastid | 26.43 | 22.28 |
| Bra027724.1-P | Field mustard | cytosol, plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G358400.1 | EnsemblPlantsGene:TraesCS4B01G358400 | Gene3D:3.40.50.720 | InterPro:NAD(P)-bd_dom_sf | InterPro:SDR_fam | PANTHER:PTHR24320 |
| PANTHER:PTHR24320:SF114 | PFAM:PF00106 | PRINTS:PR00080 | PRINTS:PR00081 | SEG:seg | SUPFAM:SSF51735 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4B:-:648912416..648914008
Molecular Weight (calculated)
35386.7 Da
IEP (calculated)
9.197
GRAVY (calculated)
0.110
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MLQAARYLLG SPGASGFGSK STAEEVTAAC PDLGSLTAII TGATSGIGAE TARVLAKRGA RVVIPARSVK AAEDMRARIL AECPGADVLV LHLDLSSLAS
101: VRAFASHFLS LGLPLHLLIN NAGKFSHGQL ALSEDGVEMT FATNYLGHFL LTKLLLGRMT ETAASTGVQG RIVNVSSSVH GWFSGDWADY LQLVTRRKIP
201: YDATQAYAVS KLANVLHTKE LAARLQEMGA DVTVNCVHPG IVRTRLNRDR EGLITDLVFA LLSKLLKTIP QAAATTCYAA VHPRLAGVSG RYLADCNEAL
301: PSPAAASRRE AARLWQASED MISGSSQHKD RNI
101: VRAFASHFLS LGLPLHLLIN NAGKFSHGQL ALSEDGVEMT FATNYLGHFL LTKLLLGRMT ETAASTGVQG RIVNVSSSVH GWFSGDWADY LQLVTRRKIP
201: YDATQAYAVS KLANVLHTKE LAARLQEMGA DVTVNCVHPG IVRTRLNRDR EGLITDLVFA LLSKLLKTIP QAAATTCYAA VHPRLAGVSG RYLADCNEAL
301: PSPAAASRRE AARLWQASED MISGSSQHKD RNI
001: MIETGKYLLG AAGASGFGSK STAEEVTENC DLRSITAVIT GATSGIGAET ARVLAKRGAR LIFPARNVKA AEEAKERIVS EFPETEIVVM KLDLSSIASV
101: RNFVADFESL DLPLNLLINN AGKLAHEHAI SEDGIEMTFA TNYLGHFLLT NLLLNKMIQT AEETGVQGRI VNVTSGIHGW FSGDLIEYLR LISQPKCQFD
201: ATRAYALSKL ANVLHTKELS SRLQKIGANV TVNCVHPGVV RTRLTRDREG LLTDLVFFLA SKLVKTVPQA AATTCYVATN PRLVNVSGKY FTDCNETTPS
301: GLGTNSSEAT KLWAASEILV TQHSKTSFDP CS
101: RNFVADFESL DLPLNLLINN AGKLAHEHAI SEDGIEMTFA TNYLGHFLLT NLLLNKMIQT AEETGVQGRI VNVTSGIHGW FSGDLIEYLR LISQPKCQFD
201: ATRAYALSKL ANVLHTKELS SRLQKIGANV TVNCVHPGVV RTRLTRDREG LLTDLVFFLA SKLVKTVPQA AATTCYVATN PRLVNVSGKY FTDCNETTPS
301: GLGTNSSEAT KLWAASEILV TQHSKTSFDP CS
Arabidopsis Description
AT4g24050/T19F6_40 [Source:UniProtKB/TrEMBL;Acc:O22985]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.