Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g087940.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G24050.1 | Solyc02g087940.2.1 | AT1G20770.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400031933 | Potato | cytosol | 96.74 | 96.74 |
| VIT_02s0025g02190.t01 | Wine grape | cytosol | 79.82 | 80.06 |
| KRH41377 | Soybean | cytosol | 78.64 | 78.64 |
| AT4G24050.1 | Thale cress | cytosol | 75.96 | 77.11 |
| Bra019248.1-P | Field mustard | cytosol | 75.96 | 77.11 |
| CDY10985 | Canola | cytosol | 74.78 | 75.9 |
| CDX76323 | Canola | cytosol | 74.48 | 75.6 |
| Bra013757.1-P | Field mustard | cytosol | 74.18 | 75.3 |
| CDY72089 | Canola | cytosol | 44.81 | 75.12 |
| CDY53896 | Canola | plastid | 44.51 | 75.0 |
| CDY72311 | Canola | cytosol | 44.81 | 74.75 |
| CDY50440 | Canola | mitochondrion | 74.18 | 73.75 |
| AT1G64590.1 | Thale cress | plastid | 72.11 | 72.75 |
| GSMUA_Achr8P11870_001 | Banana | cytosol | 72.4 | 71.76 |
| Bra027706.1-P | Field mustard | plastid | 73.0 | 71.1 |
| CDY53433 | Canola | plastid | 72.7 | 70.4 |
| TraesCS4D01G351800.1 | Wheat | mitochondrion | 69.14 | 69.76 |
| TraesCS5A01G527400.1 | Wheat | mitochondrion | 68.84 | 69.67 |
| TraesCS4B01G358400.1 | Wheat | mitochondrion | 68.25 | 69.07 |
| TraesCS4B01G358200.1 | Wheat | mitochondrion, plastid | 67.95 | 68.77 |
| Os03t0115700-01 | Rice | mitochondrion | 67.36 | 68.37 |
| Bra027725.1-P | Field mustard | plastid | 71.81 | 68.36 |
| TraesCS4B01G358500.1 | Wheat | mitochondrion | 69.14 | 67.73 |
| TraesCS5A01G527300.1 | Wheat | mitochondrion | 68.25 | 67.65 |
| HORVU4Hr1G086380.1 | Barley | mitochondrion, plastid | 68.25 | 66.47 |
| GSMUA_Achr11P... | Banana | cytosol | 67.36 | 65.8 |
| TraesCS4D01G351700.1 | Wheat | mitochondrion, plastid | 67.66 | 64.77 |
| TraesCS4B01G358300.1 | Wheat | plastid | 58.75 | 63.46 |
| OQU93381 | Sorghum | mitochondrion | 66.47 | 63.1 |
| Os06t0129100-01 | Rice | mitochondrion | 65.88 | 62.89 |
| Zm00001d027353_P001 | Maize | mitochondrion | 65.58 | 61.22 |
| Zm00001d045495_P001 | Maize | mitochondrion | 64.99 | 60.66 |
| EER87765 | Sorghum | mitochondrion | 63.8 | 59.72 |
| HORVU7Hr1G011180.12 | Barley | plastid | 62.31 | 58.5 |
| TraesCS7A01G061000.1 | Wheat | mitochondrion, plastid | 61.13 | 58.03 |
| TraesCS4A01G428800.1 | Wheat | mitochondrion, plastid | 61.13 | 57.38 |
| TraesCS7D01G055800.1 | Wheat | mitochondrion, plastid | 61.13 | 56.91 |
| Solyc03g112540.2.1 | Tomato | endoplasmic reticulum | 54.01 | 50.56 |
| Solyc10g086390.1.1 | Tomato | mitochondrion | 46.88 | 48.92 |
| Solyc09g010510.2.1 | Tomato | cytosol, mitochondrion, plastid | 46.29 | 48.75 |
| Solyc03g025370.2.1 | Tomato | cytosol, nucleus, plastid | 45.1 | 48.56 |
| Solyc08g081200.2.1 | Tomato | cytosol | 43.62 | 46.67 |
| Solyc03g025410.2.1 | Tomato | nucleus | 42.43 | 45.69 |
| Solyc03g025390.2.1 | Tomato | cytosol | 42.14 | 45.37 |
| Solyc06g071610.1.1 | Tomato | plastid | 49.26 | 45.36 |
| Solyc03g025400.2.1 | Tomato | cytosol | 41.84 | 44.62 |
| Solyc08g008060.1.1 | Tomato | cytosol | 40.65 | 43.49 |
| CDY47833 | Canola | cytosol, nucleus, plastid | 72.4 | 27.39 |
| CDY08387 | Canola | cytosol, nucleus, plastid | 72.11 | 27.27 |
| Solyc12g042640.1.1 | Tomato | cytosol | 27.0 | 25.07 |
| Solyc03g098460.2.1 | Tomato | cytosol | 27.89 | 24.42 |
| Solyc07g054210.2.1 | Tomato | plastid | 27.6 | 23.31 |
| Solyc10g006900.2.1 | Tomato | plastid | 27.3 | 23.29 |
| Solyc12g013710.1.1 | Tomato | extracellular, nucleus, plastid | 26.71 | 22.67 |
| Bra027724.1-P | Field mustard | cytosol, plastid | 0.89 | 0.55 |
Protein Annotations
| EnsemblPlants:Solyc08g082870.2.1 | EnsemblPlantsGene:Solyc08g082870.2 | Gene3D:3.40.50.720 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016491 | GO:GO:0055114 | InterPro:NAD(P)-bd_dom_sf | InterPro:SDR_fam | PANTHER:PTHR24320 |
| PANTHER:PTHR24320:SF114 | PFAM:PF00106 | PRINTS:PR00080 | PRINTS:PR00081 | SEG:seg | SUPFAM:SSF51735 |
| UniParc:UPI000276CACB | UniProt:K4CPT3 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr8:+:65534442..65537684
Molecular Weight (calculated)
36457.9 Da
IEP (calculated)
9.296
GRAVY (calculated)
0.021
Length
337 amino acids
Sequence
(BLAST)
(BLAST)
001: MLETVKYLLG SAGASGYGSK STAENVTEQS PDLRSVTAII TGATSGIGAE TARVLAKRGV KLILPARSVK AAEETKTRIL SEVPEAEIIV MALDLSSLSS
101: VRNFVAEFEY LNFPLNLLIN NAGKFAHQHA ISEDGIEMTF ATNHLGHFLL TKLLLKKMIE TANETGVQGR IVNVSSSIHG WFSGDSIQYL RLITKDKSQY
201: DATRAYALSK LANVLHTKEL ARVLKKTGAN VTVNCVHPGI VRTRLTRERE GLVTDLVFFL TSKLLKTIPQ AAATTCYVAT HPRLANVSGK YFADCNEVCS
301: SKLGSNSTEA ARIWSASEIM VAKNSNANLD PLEASLL
101: VRNFVAEFEY LNFPLNLLIN NAGKFAHQHA ISEDGIEMTF ATNHLGHFLL TKLLLKKMIE TANETGVQGR IVNVSSSIHG WFSGDSIQYL RLITKDKSQY
201: DATRAYALSK LANVLHTKEL ARVLKKTGAN VTVNCVHPGI VRTRLTRERE GLVTDLVFFL TSKLLKTIPQ AAATTCYVAT HPRLANVSGK YFADCNEVCS
301: SKLGSNSTEA ARIWSASEIM VAKNSNANLD PLEASLL
001: MIETGKYLLG AAGASGFGSK STAEEVTENC DLRSITAVIT GATSGIGAET ARVLAKRGAR LIFPARNVKA AEEAKERIVS EFPETEIVVM KLDLSSIASV
101: RNFVADFESL DLPLNLLINN AGKLAHEHAI SEDGIEMTFA TNYLGHFLLT NLLLNKMIQT AEETGVQGRI VNVTSGIHGW FSGDLIEYLR LISQPKCQFD
201: ATRAYALSKL ANVLHTKELS SRLQKIGANV TVNCVHPGVV RTRLTRDREG LLTDLVFFLA SKLVKTVPQA AATTCYVATN PRLVNVSGKY FTDCNETTPS
301: GLGTNSSEAT KLWAASEILV TQHSKTSFDP CS
101: RNFVADFESL DLPLNLLINN AGKLAHEHAI SEDGIEMTFA TNYLGHFLLT NLLLNKMIQT AEETGVQGRI VNVTSGIHGW FSGDLIEYLR LISQPKCQFD
201: ATRAYALSKL ANVLHTKELS SRLQKIGANV TVNCVHPGVV RTRLTRDREG LLTDLVFFLA SKLVKTVPQA AATTCYVATN PRLVNVSGKY FTDCNETTPS
301: GLGTNSSEAT KLWAASEILV TQHSKTSFDP CS
Arabidopsis Description
AT4g24050/T19F6_40 [Source:UniProtKB/TrEMBL;Acc:O22985]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.