Factsheet for Solyc12g042640.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073742	Potato	cytosol	90.91	90.91
Solyc03g098460.2.1	Tomato	cytosol	57.58	54.29
CDY70072	Canola	cytosol	22.86	49.7
Solyc08g081200.2.1	Tomato	cytosol	27.0	31.11
Solyc03g025370.2.1	Tomato	cytosol, nucleus, plastid	26.72	30.99
Solyc03g025400.2.1	Tomato	cytosol	26.17	30.06
Solyc03g025390.2.1	Tomato	cytosol	25.9	30.03
Solyc08g008060.1.1	Tomato	cytosol	25.9	29.84
Solyc03g025410.2.1	Tomato	nucleus	24.79	28.75
Solyc09g010510.2.1	Tomato	cytosol, mitochondrion, plastid	25.07	28.44
Solyc10g086390.1.1	Tomato	mitochondrion	24.79	27.86
Solyc08g082870.2.1	Tomato	cytosol	25.07	27.0
Solyc03g112540.2.1	Tomato	endoplasmic reticulum	24.24	24.44
Solyc06g071610.1.1	Tomato	plastid	23.42	23.22
Solyc07g054210.2.1	Tomato	plastid	22.86	20.8
Solyc10g006900.2.1	Tomato	plastid	22.31	20.51
Solyc12g013710.1.1	Tomato	extracellular, nucleus, plastid	21.76	19.9

Protein Annotations

EnsemblPlants:Solyc12g042640.1.1	EnsemblPlantsGene:Solyc12g042640.1	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	PANTHER:PTHR24320
PANTHER:PTHR24320:SF73	PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081	SEG:seg	SUPFAM:SSF51735
UniParc:UPI000276AB35	UniProt:K4DF55	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr12:-:39878866..39879957

Molecular Weight (calculated)

40848.9 Da

IEP (calculated)

8.478

GRAVY (calculated)

-0.088

Length

363 amino acids

Sequence
(BLAST)

001: MNSSSKGLEW KEWLQGWLRL TYETLFQKIH AKHLQEPLPL PPLNGLNCIV TGATSGIGLE IAKQLAESGA HLVMAVRNTN LAHQLIEKWQ RNETVSRPLS
101: IDVIELDLFY LESVVKFAKE WNSRSKPLHI LINNAGIYSI GQPQKFTKDG YETHIQVNHL APALLSLLLL PSLKRGSPSR IINMNSLMHV IGVVDPQDMN
201: FLTKKNKFTS RKAYSSSKLA QMKFSSILQK LLINTNIHVM CVEPGAVRTN VTRDLPRILN ILYQKMFFFM FDAQQGSRSA LFAATDAEIL DYCGVLKAEG
301: CIGCAFIGCH CRISEPSKQV DNERTSFEIW DKTMEMVGLP AGCVDMILQG EEIHCRYGAV NDR

Best Arabidopsis Sequence Match ( AT5G53090.1 )
(BLAST)

001: MSSETSSLTK KMKKKKEGLG WIESIKGWSC VFHEFLFQRF MASHLQNPLP LPSLNHLTCI VTGSTSGIGR ETARQLAEAG ARVVMAVRNT KAAHELIQQW
101: QKEWSGKGIP LNLEAMELDL LSLDSVVGFC NLWNARLSPL HVLINNAGIF SMGEEQKFSK DGYEQHMQVN HLAPALLSLL LLPSLIRGSP SRIINVNSVM
201: HYVGFVDPDD MNVVSGKRKF TSLVGYSGSK LAQVMFSNVL LKRLPLETRI SVVCLSPGIV LTNVARDLPR YVQVQYALIP YFIFSPQEGS RSTLFSATDA
301: QIPEHCEKLK TEDKPVCTFI SQNCKHTKPS EEAHNVETAE RVWEKTIKLI GLPLDAVERL IEGEEVQCRY GTHQQ

Arabidopsis Description

At5g53090 [Source:UniProtKB/TrEMBL;Acc:Q66GR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.