Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g042640.1.1 | Tomato | cytosol | 90.91 | 90.91 |
| PGSC0003DMT400026316 | Potato | cytosol | 56.2 | 52.99 |
| CDY70072 | Canola | cytosol | 22.31 | 48.5 |
| PGSC0003DMT400085601 | Potato | plastid | 14.33 | 32.3 |
| PGSC0003DMT400040848 | Potato | plastid | 26.72 | 30.99 |
| PGSC0003DMT400040847 | Potato | cytosol | 26.45 | 30.67 |
| PGSC0003DMT400032133 | Potato | cytosol | 26.17 | 30.16 |
| PGSC0003DMT400040845 | Potato | cytosol | 25.62 | 29.71 |
| PGSC0003DMT400069439 | Potato | plastid | 19.28 | 28.69 |
| PGSC0003DMT400022813 | Potato | mitochondrion | 24.79 | 28.12 |
| PGSC0003DMT400049292 | Potato | mitochondrion | 24.79 | 27.86 |
| PGSC0003DMT400031933 | Potato | cytosol | 25.34 | 27.3 |
| PGSC0003DMT400046811 | Potato | plastid | 24.24 | 26.59 |
| PGSC0003DMT400014810 | Potato | mitochondrion | 16.8 | 24.9 |
| PGSC0003DMT400047264 | Potato | plastid | 23.14 | 21.11 |
| PGSC0003DMT400064369 | Potato | plastid | 22.86 | 20.85 |
| PGSC0003DMT400039734 | Potato | plastid | 22.04 | 20.15 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400073742 | EnsemblPlantsGene:PGSC0003DMG400028647 | EntrezGene:102600467 | Gene3D:3.40.50.720 | InterPro:NAD(P)-bd_dom_sf | InterPro:SDR_fam |
| PANTHER:PTHR24320 | PANTHER:PTHR24320:SF73 | PFAM:PF00106 | PGSC:PGSC0003DMG400028647 | PRINTS:PR00080 | PRINTS:PR00081 |
| RefSeq:XP_006346653.1 | SEG:seg | SUPFAM:SSF51735 | UniParc:UPI000294BCF4 | UniProt:M1CSL0 | MapMan:35.1 |
Description
Short-chain dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400028647]
Coordinates
chr12:+:49631258..49632349
Molecular Weight (calculated)
40830.4 Da
IEP (calculated)
8.329
GRAVY (calculated)
-0.159
Length
363 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSSSTGLEW TEWLQGWRRL TYETLFQKIH AKHLQDPLLL PPLNGLNCIV TGATSGIGLE IAKQLAESGA HLVMAVRNTS FAHQLIQKWR RNETESRPLS
101: IDVIELDLFH LESVVKFAQE WNSRSKPLHI LINNAGIYSI GQPQKFTKDG YETHIQVNHL APALLSVLLL PSLKRGSPSR IINMNSLMHV IGVVDPQDMN
201: FLTKKSKFTS RKAYSSSKLA QLKFSSILQK FLMNTNIHVM CVEPGAVRTN VTRDLSRILN ILYQKMFFFM FDAQQGSRSA LFAATDSDNL DYCGDLKAQG
301: CNVCAFIGCH CRISEPSKEA YNERTSFEIW NKTMEMVGLP AGGVDMILQG EEIHCCYGAN SDR
101: IDVIELDLFH LESVVKFAQE WNSRSKPLHI LINNAGIYSI GQPQKFTKDG YETHIQVNHL APALLSVLLL PSLKRGSPSR IINMNSLMHV IGVVDPQDMN
201: FLTKKSKFTS RKAYSSSKLA QLKFSSILQK FLMNTNIHVM CVEPGAVRTN VTRDLSRILN ILYQKMFFFM FDAQQGSRSA LFAATDSDNL DYCGDLKAQG
301: CNVCAFIGCH CRISEPSKEA YNERTSFEIW NKTMEMVGLP AGGVDMILQG EEIHCCYGAN SDR
001: MSSETSSLTK KMKKKKEGLG WIESIKGWSC VFHEFLFQRF MASHLQNPLP LPSLNHLTCI VTGSTSGIGR ETARQLAEAG ARVVMAVRNT KAAHELIQQW
101: QKEWSGKGIP LNLEAMELDL LSLDSVVGFC NLWNARLSPL HVLINNAGIF SMGEEQKFSK DGYEQHMQVN HLAPALLSLL LLPSLIRGSP SRIINVNSVM
201: HYVGFVDPDD MNVVSGKRKF TSLVGYSGSK LAQVMFSNVL LKRLPLETRI SVVCLSPGIV LTNVARDLPR YVQVQYALIP YFIFSPQEGS RSTLFSATDA
301: QIPEHCEKLK TEDKPVCTFI SQNCKHTKPS EEAHNVETAE RVWEKTIKLI GLPLDAVERL IEGEEVQCRY GTHQQ
101: QKEWSGKGIP LNLEAMELDL LSLDSVVGFC NLWNARLSPL HVLINNAGIF SMGEEQKFSK DGYEQHMQVN HLAPALLSLL LLPSLIRGSP SRIINVNSVM
201: HYVGFVDPDD MNVVSGKRKF TSLVGYSGSK LAQVMFSNVL LKRLPLETRI SVVCLSPGIV LTNVARDLPR YVQVQYALIP YFIFSPQEGS RSTLFSATDA
301: QIPEHCEKLK TEDKPVCTFI SQNCKHTKPS EEAHNVETAE RVWEKTIKLI GLPLDAVERL IEGEEVQCRY GTHQQ
Arabidopsis Description
At5g53090 [Source:UniProtKB/TrEMBL;Acc:Q66GR1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.