Factsheet for PGSC0003DMT400040847

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g025390.2.1	Tomato	cytosol	95.21	95.21
PGSC0003DMT400040845	Potato	cytosol	80.19	80.19
PGSC0003DMT400085601	Potato	plastid	37.7	73.29
KRG91556	Soybean	cytosol	71.89	71.89
GSMUA_AchrUn_...	Banana	cytosol	68.37	68.37
KRH08894	Soybean	plastid	47.28	68.2
KRH08897	Soybean	cytosol, mitochondrion	67.73	67.52
PGSC0003DMT400040848	Potato	plastid	67.09	67.09
KRH38432	Soybean	cytosol	68.37	67.08
PGSC0003DMT400032133	Potato	cytosol	67.41	66.98
KRG91557	Soybean	cytosol	44.41	66.83
GSMUA_Achr2P18620_001	Banana	plastid	67.09	66.46
KRH38433	Soybean	cytosol	67.09	65.83
KRH08898	Soybean	cytosol	66.13	65.51
EER96376	Sorghum	mitochondrion, plastid	65.5	64.87
KRH35271	Soybean	plastid	71.57	64.18
PGSC0003DMT400014810	Potato	mitochondrion	50.16	64.08
TraesCS4D01G003200.1	Wheat	golgi	64.54	63.92
TraesCS4B01G002900.1	Wheat	golgi	64.54	63.92
KRH38431	Soybean	plastid	65.81	63.78
TraesCS4A01G311400.1	Wheat	mitochondrion, plastid	64.22	63.61
TraesCS4D01G002700.2	Wheat	mitochondrion, plastid	63.9	63.49
KRH38426	Soybean	cytosol	65.81	63.19
Os09t0570300-01	Rice	plasma membrane	63.26	62.66
TraesCS4B01G003400.1	Wheat	plastid	62.94	62.54
TraesCS4D01G003400.2	Wheat	mitochondrion	63.58	61.8
KRH35274	Soybean	cytosol, mitochondrion, plastid	70.61	61.56
TraesCS5B01G461100.1	Wheat	mitochondrion, plastid	22.36	60.87
TraesCS3B01G220800.1	Wheat	mitochondrion, plastid	22.36	60.87
TraesCS4A01G492800.1	Wheat	mitochondrion, plastid	22.04	60.0
EER91987	Sorghum	plastid	59.74	59.74
Os10t0547900-01	Rice	cytosol	59.74	59.55
OQU92195	Sorghum	cytosol	59.74	59.37
Zm00001d047150_P003	Maize	plastid	59.42	59.05
Os10t0548000-02	Rice	cytosol, peroxisome, plastid	59.74	58.62
Zm00001d025129_P001	Maize	mitochondrion	43.45	57.87
TraesCS1B01G221200.1	Wheat	cytosol	58.15	57.78
Os04t0291100-01	Rice	mitochondrion	57.51	57.32
OQU92191	Sorghum	plastid	57.19	57.19
Zm00001d019754_P001	Maize	mitochondrion, plastid	64.22	56.94
TraesCS1A01G207500.1	Wheat	cytosol	57.19	56.83
TraesCS1D01G210800.1	Wheat	plastid	57.19	56.29
Zm00001d029840_P003	Maize	plastid	59.42	55.69
PGSC0003DMT400022813	Potato	mitochondrion	56.55	55.31
KRH08895	Soybean	cytosol	67.09	54.97
PGSC0003DMT400049292	Potato	mitochondrion	56.23	54.49
PGSC0003DMT400069439	Potato	plastid	34.82	44.67
PGSC0003DMT400046811	Potato	plastid	45.37	42.9
PGSC0003DMT400031933	Potato	cytosol	45.05	41.84
VIT_16s0050g00750.t01	Wine grape	plastid	73.48	36.8
PGSC0003DMT400047264	Potato	plastid	34.5	27.14
PGSC0003DMT400064369	Potato	plastid	34.5	27.14
PGSC0003DMT400039734	Potato	plastid	33.87	26.7
PGSC0003DMT400073742	Potato	cytosol	30.67	26.45
PGSC0003DMT400026316	Potato	cytosol	31.31	25.45

Protein Annotations

EnsemblPlants:PGSC0003DMT400040847	EnsemblPlantsGene:PGSC0003DMG402015792	EntrezGene:102578900	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
PANTHER:PTHR24320	PANTHER:PTHR24320:SF121	PFAM:PF00106	PGSC:PGSC0003DMG402015792	PRINTS:PR00080	PRINTS:PR00081
RefSeq:XP_006353883.1	SEG:seg	SUPFAM:SSF51735	UniParc:UPI000295C33E	UniProt:M1BAI8	MapMan:23.1.3.5.1

Description

Short-chain dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG402015792]

Coordinates

chr3:+:43492819..43498769

Molecular Weight (calculated)

34143.3 Da

IEP (calculated)

8.609

GRAVY (calculated)

-0.040

Length

313 amino acids

Sequence
(BLAST)

001: MWLFKKKGES GFSYSSTAEE VTIGIDGSGL IAIVTGASSG IGAETTRVLA LRGVHVIMAV RNMTAGKDVK EAIVKEIPAA KVDVMELDLS SFDSVKKFAA
101: DFISSGHSLN ILINNAGVMA IPFMLSKDNI ELQFATNHLG HFLLTNLLLE KMKETACETK REGRIVNVAS DAHYVTYPEG IRFDKINDQE SYSKFSAYGQ
201: SKMANILSTY ELAKRLKEDG VEITANSLNP GAISSNLFRH MTIINGLVST IGKLLLKNVQ QGAATTCYIA LNPQVKGVSG EYFQDNNLAT PSKKARNMDL
301: AKKLWDFSMD LVK

Best Arabidopsis Sequence Match ( AT4G23420.2 )
(BLAST)

001: MWFFGSKGAS GFSSRSTAEE VTHGVDGTGL TAIVTGASSG IGVETARVLA LRGVHVVMAV RNTGAGAKVK EDIVKQVPGA KVDVMELELS SMESVRKFAS
101: EYKSAGLPLN LLINNAGIMA CPFMLSKDNI ELQFATNHLG HFLLTKLLLD TMKNTSRESK REGRIVNVSS EAHRYSYPEG VRFDKINDES SYSSIRAYGQ
201: SKLCNVLHAN ELAKQLKEDG VNITANSLHP GAIMTNLWGY FNSYLAGAVG AVAKYMVKSV PQGAATTCYV ALNPQVAGVT GEYFSDSNIA KPIELVKDTE
301: LAKKLWDFST KLTDSQ

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JNJ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.