Factsheet for PGSC0003DMT400046811

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400038470
PGSC0003DMT400076081

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50130.1	PGSC0003DMT400038470	AT5G39730.1	21798944
AT5G50130.1	PGSC0003DMT400076081	AT5G39730.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g112540.2.1	Tomato	endoplasmic reticulum	98.19	90.28
PGSC0003DMT400069439	Potato	plastid	59.52	80.74
VIT_17s0000g08920.t01	Wine grape	cytosol	78.25	78.48
KRH54355	Soybean	cytosol	74.32	74.55
KRH57109	Soybean	mitochondrion	72.81	71.51
KRH03249	Soybean	mitochondrion, plastid	72.51	71.22
KRH63592	Soybean	plastid	74.02	68.82
AT5G50130.1	Thale cress	mitochondrion	69.49	67.85
GSMUA_Achr1P25440_001	Banana	cytosol	61.33	65.91
PGSC0003DMT400031933	Potato	cytosol	54.68	53.71
CDX71585	Canola	mitochondrion	54.98	53.69
PGSC0003DMT400040848	Potato	plastid	45.92	48.56
PGSC0003DMT400022813	Potato	mitochondrion	46.53	48.12
PGSC0003DMT400049292	Potato	mitochondrion	46.83	47.99
PGSC0003DMT400040845	Potato	cytosol	45.02	47.6
PGSC0003DMT400085601	Potato	plastid	22.36	45.96
PGSC0003DMT400032133	Potato	cytosol	43.5	45.71
PGSC0003DMT400040847	Potato	cytosol	42.9	45.37
Bra037939.1-P	Field mustard	cytosol	66.16	44.06
PGSC0003DMT400014810	Potato	mitochondrion	32.33	43.67
CDY37755	Canola	mitochondrion, plastid	66.16	35.15
PGSC0003DMT400073742	Potato	cytosol	26.59	24.24
PGSC0003DMT400026316	Potato	cytosol	27.49	23.64
PGSC0003DMT400047264	Potato	plastid	27.49	22.86
PGSC0003DMT400039734	Potato	plastid	25.98	21.66
PGSC0003DMT400064369	Potato	plastid	25.68	21.36

Protein Annotations

EnsemblPlants:PGSC0003DMT400046811	EnsemblPlantsGene:PGSC0003DMG400018174	EntrezGene:102599784	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
PANTHER:PTHR24320	PANTHER:PTHR24320:SF120	PFAM:PF00106	PGSC:PGSC0003DMG400018174	PRINTS:PR00080	PRINTS:PR00081
RefSeq:XP_006344514.1	SEG:seg	SUPFAM:SSF51735	UniParc:UPI0002949E17	UniProt:M1BJN5	MapMan:35.1

Description

Short-chain dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400018174]

Coordinates

chr3:+:52332496..52337414

Molecular Weight (calculated)

36648.3 Da

IEP (calculated)

10.092

GRAVY (calculated)

-0.134

Length

331 amino acids

Sequence
(BLAST)

001: MKATLKYLAG IAGPSGYGSK TTAEQATRDF SNSSNSQLTA IITGATSGIG AETARVLAKR GVRIVLPARD LKKAEIVKEF IQKETPMAQI ILLEIDLSSF
101: ASIQRFCAEF LSLQLPLHIL INNAGKFSQK LEFSEDKIEM TFATNYLGHF LLTELLLEKM VETAEGSGIQ GRIVNVTSVV HNWVKRDQFR FSQLLNPKKY
201: YNGTRAYAQS KLANILHAKE LSRQLKARNA NVTINAVHPG IVKTGIIRDH KGFITDSLYF MASKLLKSTS QGAASTCYVA LSPQTEGMSG KYFADCNESH
301: SSVLANDEIE AHKLWKGTRV LIYRRFLPHV N

Best Arabidopsis Sequence Match ( AT5G50130.1 )
(BLAST)

001: MKGTLRYLAG IAGPNGFGSR STAEQVTQHS FFPCSHLTAI ITGGTSGIGA ETARVLAKRG VRVVMAVRDM KKAEMVKERI IRENPEADII LFEIDLSSLS
101: SVARFCSQFL SQDLPLNILI NNAGVFSPNL EFSEEKIELT FATNFLGHYL LTEMLIEKMI DTAEKSGIEG RIINLSSVIH NWVKPDCFSF PKLLHPISRY
201: NGTRAYAQSK LATILHAKAL SKQLKDRNAN VTINAVHPGI VKTGIIRAHK GLFTDSLFLI ASKLLKSISQ GAATTCYVAL SNETKGLSGK YFADCNETNC
301: SDLANDEYVA LKLCTQSRAL IHDHLHEFQI HALPNLCFL

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8RWK2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.