Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400003346 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G24050.1 | PGSC0003DMT400003346 | AT1G20770.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g082870.2.1 | Tomato | cytosol | 96.74 | 96.74 |
| VIT_02s0025g02190.t01 | Wine grape | cytosol | 81.31 | 81.55 |
| KRH41377 | Soybean | cytosol | 77.74 | 77.74 |
| Bra019248.1-P | Field mustard | cytosol | 75.37 | 76.51 |
| AT4G24050.1 | Thale cress | cytosol | 75.07 | 76.2 |
| CDY10985 | Canola | cytosol | 74.18 | 75.3 |
| CDX76323 | Canola | cytosol | 73.89 | 75.0 |
| Bra013757.1-P | Field mustard | cytosol | 73.59 | 74.7 |
| CDY53896 | Canola | plastid | 44.21 | 74.5 |
| CDY72089 | Canola | cytosol | 44.21 | 74.13 |
| CDY72311 | Canola | cytosol | 44.21 | 73.76 |
| CDY50440 | Canola | mitochondrion | 73.59 | 73.16 |
| AT1G64590.1 | Thale cress | plastid | 72.11 | 72.75 |
| GSMUA_Achr8P11870_001 | Banana | cytosol | 72.11 | 71.47 |
| Bra027706.1-P | Field mustard | plastid | 73.0 | 71.1 |
| CDY53433 | Canola | plastid | 72.7 | 70.4 |
| TraesCS4D01G351800.1 | Wheat | mitochondrion | 69.44 | 70.06 |
| TraesCS5A01G527400.1 | Wheat | mitochondrion | 69.14 | 69.97 |
| TraesCS4B01G358400.1 | Wheat | mitochondrion | 68.55 | 69.37 |
| TraesCS4B01G358200.1 | Wheat | mitochondrion, plastid | 68.25 | 69.07 |
| Os03t0115700-01 | Rice | mitochondrion | 67.66 | 68.67 |
| TraesCS4B01G358500.1 | Wheat | mitochondrion | 70.03 | 68.6 |
| Bra027725.1-P | Field mustard | plastid | 71.81 | 68.36 |
| TraesCS5A01G527300.1 | Wheat | mitochondrion | 68.25 | 67.65 |
| HORVU4Hr1G086380.1 | Barley | mitochondrion, plastid | 68.25 | 66.47 |
| GSMUA_Achr11P... | Banana | cytosol | 67.66 | 66.09 |
| TraesCS4D01G351700.1 | Wheat | mitochondrion, plastid | 67.95 | 65.06 |
| TraesCS4B01G358300.1 | Wheat | plastid | 59.05 | 63.78 |
| OQU93381 | Sorghum | mitochondrion | 67.06 | 63.66 |
| Os06t0129100-01 | Rice | mitochondrion | 66.47 | 63.46 |
| Zm00001d027353_P001 | Maize | mitochondrion | 66.47 | 62.05 |
| Zm00001d045495_P001 | Maize | mitochondrion | 65.58 | 61.22 |
| EER87765 | Sorghum | mitochondrion | 64.09 | 60.0 |
| HORVU7Hr1G011180.12 | Barley | plastid | 62.91 | 59.05 |
| TraesCS7A01G061000.1 | Wheat | mitochondrion, plastid | 61.72 | 58.59 |
| TraesCS4A01G428800.1 | Wheat | mitochondrion, plastid | 61.72 | 57.94 |
| TraesCS7D01G055800.1 | Wheat | mitochondrion, plastid | 61.72 | 57.46 |
| PGSC0003DMT400046811 | Potato | plastid | 53.71 | 54.68 |
| PGSC0003DMT400069439 | Potato | plastid | 38.28 | 52.87 |
| PGSC0003DMT400049292 | Potato | mitochondrion | 46.59 | 48.61 |
| PGSC0003DMT400022813 | Potato | mitochondrion | 45.4 | 47.81 |
| PGSC0003DMT400040848 | Potato | plastid | 43.92 | 47.28 |
| PGSC0003DMT400040845 | Potato | cytosol | 43.92 | 47.28 |
| PGSC0003DMT400085601 | Potato | plastid | 22.26 | 46.58 |
| PGSC0003DMT400032133 | Potato | cytosol | 43.03 | 46.03 |
| PGSC0003DMT400040847 | Potato | cytosol | 41.84 | 45.05 |
| PGSC0003DMT400014810 | Potato | mitochondrion | 29.67 | 40.82 |
| CDY47833 | Canola | cytosol, nucleus, plastid | 72.11 | 27.27 |
| CDY08387 | Canola | cytosol, nucleus, plastid | 71.81 | 27.16 |
| PGSC0003DMT400073742 | Potato | cytosol | 27.3 | 25.34 |
| PGSC0003DMT400026316 | Potato | cytosol | 27.0 | 23.64 |
| PGSC0003DMT400064369 | Potato | plastid | 27.0 | 22.86 |
| PGSC0003DMT400047264 | Potato | plastid | 27.0 | 22.86 |
| PGSC0003DMT400039734 | Potato | plastid | 25.82 | 21.91 |
| Bra027724.1-P | Field mustard | cytosol, plastid | 0.59 | 0.37 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400031933 | EnsemblPlantsGene:PGSC0003DMG400012251 | EntrezGene:102596958 | Gene3D:3.40.50.720 | InterPro:NAD(P)-bd_dom_sf | InterPro:SDR_fam |
| PANTHER:PTHR24320 | PANTHER:PTHR24320:SF114 | PFAM:PF00106 | PGSC:PGSC0003DMG400012251 | PRINTS:PR00080 | PRINTS:PR00081 |
| RefSeq:XP_006343805.1 | SEG:seg | SUPFAM:SSF51735 | UniParc:UPI000295999D | UniProt:M1AWI8 | MapMan:35.1 |
Description
Short-chain dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400012251]
Coordinates
chr8:+:56450720..56454173
Molecular Weight (calculated)
36478.0 Da
IEP (calculated)
9.463
GRAVY (calculated)
-0.011
Length
337 amino acids
Sequence
(BLAST)
(BLAST)
001: MLETVKYLLG SAGASGYGSK STAENVTEQS PDLRSVTAII TGATSGIGAE TARVMAKRGV KLILPARSVK AAEETKARIL SEVPEAEIIV MALDLSSLSS
101: VRKFVAEFEY LNFPLNLLIN NAGKFAHQHA ISEDGIEMTF ATNHLGHFLL TKLLLKKMIE TANKTGVQGR IVNVSSSIHG WFSGDSIQYL RLITKDKSQY
201: DATRAYALSK LANVLHTKEL AQILKKMGAN VTVNCVHPGI VRTRLTRERE GLVTDLVFFL TSKLLKTIPQ AAATTCYVAT HPRLANVSGK YFADCNEVCS
301: SKLGSNSTEA ARIWSASEIM VAKNSNANLD PLDAQSD
101: VRKFVAEFEY LNFPLNLLIN NAGKFAHQHA ISEDGIEMTF ATNHLGHFLL TKLLLKKMIE TANKTGVQGR IVNVSSSIHG WFSGDSIQYL RLITKDKSQY
201: DATRAYALSK LANVLHTKEL AQILKKMGAN VTVNCVHPGI VRTRLTRERE GLVTDLVFFL TSKLLKTIPQ AAATTCYVAT HPRLANVSGK YFADCNEVCS
301: SKLGSNSTEA ARIWSASEIM VAKNSNANLD PLDAQSD
001: MIETGKYLLG AAGASGFGSK STAEEVTENC DLRSITAVIT GATSGIGAET ARVLAKRGAR LIFPARNVKA AEEAKERIVS EFPETEIVVM KLDLSSIASV
101: RNFVADFESL DLPLNLLINN AGKLAHEHAI SEDGIEMTFA TNYLGHFLLT NLLLNKMIQT AEETGVQGRI VNVTSGIHGW FSGDLIEYLR LISQPKCQFD
201: ATRAYALSKL ANVLHTKELS SRLQKIGANV TVNCVHPGVV RTRLTRDREG LLTDLVFFLA SKLVKTVPQA AATTCYVATN PRLVNVSGKY FTDCNETTPS
301: GLGTNSSEAT KLWAASEILV TQHSKTSFDP CS
101: RNFVADFESL DLPLNLLINN AGKLAHEHAI SEDGIEMTFA TNYLGHFLLT NLLLNKMIQT AEETGVQGRI VNVTSGIHGW FSGDLIEYLR LISQPKCQFD
201: ATRAYALSKL ANVLHTKELS SRLQKIGANV TVNCVHPGVV RTRLTRDREG LLTDLVFFLA SKLVKTVPQA AATTCYVATN PRLVNVSGKY FTDCNETTPS
301: GLGTNSSEAT KLWAASEILV TQHSKTSFDP CS
Arabidopsis Description
AT4g24050/T19F6_40 [Source:UniProtKB/TrEMBL;Acc:O22985]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.