Factsheet for PGSC0003DMT400085601

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G461100.1	Wheat	mitochondrion, plastid	47.83	66.96
TraesCS3B01G220800.1	Wheat	mitochondrion, plastid	47.2	66.09
TraesCS4A01G492800.1	Wheat	mitochondrion, plastid	46.58	65.22
KRH08894	Soybean	plastid	60.25	44.7
Solyc03g025400.2.1	Tomato	cytosol	81.99	41.77
PGSC0003DMT400040847	Potato	cytosol	73.29	37.7
PGSC0003DMT400040845	Potato	cytosol	73.29	37.7
KRG91556	Soybean	cytosol	68.94	35.46
KRH08897	Soybean	cytosol, mitochondrion	68.32	35.03
GSMUA_AchrUn_...	Banana	cytosol	65.22	33.55
KRH38432	Soybean	cytosol	66.46	33.54
GSMUA_Achr2P18620_001	Banana	plastid	64.6	32.91
PGSC0003DMT400040848	Potato	plastid	63.35	32.59
KRH35271	Soybean	plastid	70.19	32.38
KRH38433	Soybean	cytosol	63.98	32.29
KRH38431	Soybean	plastid	64.6	32.2
PGSC0003DMT400032133	Potato	cytosol	62.11	31.75
TraesCS4D01G003200.1	Wheat	golgi	62.11	31.65
KRH08898	Soybean	cytosol	62.11	31.65
TraesCS4B01G002900.1	Wheat	golgi	61.49	31.33
KRH38426	Soybean	cytosol	63.35	31.29
TraesCS4A01G311400.1	Wheat	mitochondrion, plastid	60.87	31.01
KRH35274	Soybean	cytosol, mitochondrion, plastid	68.94	30.92
OQU92195	Sorghum	cytosol	60.25	30.79
TraesCS4D01G002700.2	Wheat	mitochondrion, plastid	60.25	30.79
TraesCS1B01G221200.1	Wheat	cytosol	59.63	30.48
TraesCS4D01G003400.2	Wheat	mitochondrion	60.87	30.43
KRG91557	Soybean	cytosol	39.13	30.29
TraesCS4B01G003400.1	Wheat	plastid	59.01	30.16
TraesCS1A01G207500.1	Wheat	cytosol	59.01	30.16
EER96376	Sorghum	mitochondrion, plastid	59.01	30.06
PGSC0003DMT400069439	Potato	plastid	45.34	29.92
TraesCS1D01G210800.1	Wheat	plastid	59.01	29.87
OQU92191	Sorghum	plastid	57.76	29.71
EER91987	Sorghum	plastid	57.76	29.71
Zm00001d047150_P003	Maize	plastid	57.76	29.52
Os09t0570300-01	Rice	plasma membrane	57.76	29.43
KRH08895	Soybean	cytosol	68.32	28.8
Os10t0547900-01	Rice	cytosol	55.28	28.34
Os10t0548000-02	Rice	cytosol, peroxisome, plastid	55.9	28.21
Zm00001d029840_P003	Maize	plastid	58.39	28.14
Os04t0291100-01	Rice	mitochondrion	54.66	28.03
PGSC0003DMT400014810	Potato	mitochondrion	41.61	27.35
Zm00001d019754_P001	Maize	mitochondrion, plastid	59.63	27.2
PGSC0003DMT400022813	Potato	mitochondrion	51.55	25.94
PGSC0003DMT400049292	Potato	mitochondrion	49.07	24.46
PGSC0003DMT400046811	Potato	plastid	45.96	22.36
PGSC0003DMT400031933	Potato	cytosol	46.58	22.26
Zm00001d025129_P001	Maize	mitochondrion	27.33	18.72
VIT_16s0050g00750.t01	Wine grape	plastid	70.81	18.24
PGSC0003DMT400073742	Potato	cytosol	32.3	14.33
PGSC0003DMT400064369	Potato	plastid	35.4	14.32
PGSC0003DMT400026316	Potato	cytosol	34.16	14.29
PGSC0003DMT400047264	Potato	plastid	34.16	13.82
PGSC0003DMT400039734	Potato	plastid	33.54	13.6

Protein Annotations

EnsemblPlants:PGSC0003DMT400085601	EnsemblPlantsGene:PGSC0003DMG400035172	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	PANTHER:PTHR24320
PANTHER:PTHR24320:SF121	PFAM:PF00106	PGSC:PGSC0003DMG400035172	SUPFAM:SSF51735	UniParc:UPI0002948714	UniProt:M1D9V2
MapMan:35.1	:	:	:	:	:

Description

Short-chain dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400035172]

Coordinates

chr3:+:43485187..43488290

Molecular Weight (calculated)

17341.1 Da

IEP (calculated)

10.104

GRAVY (calculated)

0.289

Length

161 amino acids

Sequence
(BLAST)

001: MWVFSRSKGA SGFSYSSTAE QVTQEIDGSG LTAIVTGASS GIGAETSRVL ALRGVHVIMA VRNIAAGKDV KEAIVKEIPA AKVDIMELDL SSLASVRKFA
101: ADFISSGRSL NMLIYYSFWA YGQSKLANIL HTCELTRRLK FLISIARPVV ALAYKGSMPF N

Best Arabidopsis Sequence Match ( AT4G23420.1 )
(BLAST)

001: MWFFGSKGAS GFSSRSTAEE VTHGVDGTGL TAIVTGASSG IGVETARVLA LRGVHVVMAV RNTGAGAKVK EDIVKQVPGA KVDVMELELS SMESVRKFAS
101: EYKSAGLPLN LLINNAGIMA CPFMLSKDNI ELQFATNHLG HFLLTKLLLD TMKNTSRESK REGRIVNVSS EAHRYSYPEG VRFDKINDES SYSSIRAYGQ
201: SKLCNVLHAN ELAKQLKEDG VNITANSLHP GAIMTNLWGY FNSYLAGAVG AVAKYMVKSV PQGAATTCYV ALNPQVAGVT GEYFSDSNIA KPIELVKDTE
301: LAKKLWDFST KLTDSQ

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JNJ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.