Factsheet for PGSC0003DMT400049292

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g086390.1.1	Tomato	mitochondrion	95.67	95.67
PGSC0003DMT400022813	Potato	mitochondrion	81.11	81.88
GSMUA_Achr8P20890_001	Banana	cytosol, mitochondrion, plastid	73.99	74.69
Zm00001d039848_P002	Maize	cytosol, mitochondrion, plastid	73.68	74.38
EES02479	Sorghum	cytosol, plastid	73.68	74.38
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	72.14	72.59
VIT_08s0040g03400.t01	Wine grape	plastid	72.76	72.53
TraesCS5B01G279400.1	Wheat	plastid	71.83	72.05
Os01t0151700-01	Rice	cytosol	71.52	71.96
GSMUA_Achr11P...	Banana	cytosol	72.14	71.91
TraesCS3B01G091800.3	Wheat	cytosol	71.21	71.88
TraesCS5D01G287000.1	Wheat	plastid	71.52	71.74
KRH19708	Soybean	nucleus	71.52	71.52
KRH32305	Soybean	plastid	71.21	71.21
TraesCS5A01G280400.1	Wheat	plastid	70.9	71.12
KRG95813	Soybean	nucleus	70.9	70.9
KRH67540	Soybean	nucleus	70.9	70.9
GSMUA_Achr7P15240_001	Banana	plastid	70.9	70.68
CDY68648	Canola	cytosol	44.89	69.38
CDY10440	Canola	plastid	69.66	69.23
CDY40365	Canola	mitochondrion	70.9	69.18
Bra009580.1-P	Field mustard	mitochondrion	70.59	68.88
AT5G02540.1	Thale cress	mitochondrion	70.28	68.58
Bra017180.1-P	Field mustard	cytosol	67.49	67.91
CDY18436	Canola	cytosol	67.18	67.6
CDX81232	Canola	cytosol	66.56	66.98
CDY11217	Canola	mitochondrion	68.42	66.77
Bra005729.1-P	Field mustard	mitochondrion	68.42	66.77
Bra005188.1-P	Field mustard	cytosol	65.02	66.25
CDY52816	Canola	cytosol	65.33	65.94
CDX74954	Canola	cytosol	65.02	65.62
AT2G37540.1	Thale cress	cytosol	65.02	65.42
CDY52817	Canola	cytosol	64.71	65.31
CDX88292	Canola	cytosol	31.58	64.97
CDY55418	Canola	cytosol	59.75	64.55
TraesCS3A01G077400.2	Wheat	cytosol, plastid	69.04	63.71
HORVU3Hr1G013970.6	Barley	plastid	69.66	63.38
CDY10441	Canola	cytosol, extracellular, mitochondrion, plastid	25.7	60.58
PGSC0003DMT400040845	Potato	cytosol	57.28	59.11
HORVU5Hr1G075530.8	Barley	cytosol, nucleus, plastid	70.59	58.76
PGSC0003DMT400040848	Potato	plastid	56.04	57.83
TraesCS3D01G077500.2	Wheat	cytosol, plastid	62.23	57.43
Zm00001d039397_P001	Maize	cytosol	43.03	57.2
PGSC0003DMT400032133	Potato	cytosol	55.42	56.83
PGSC0003DMT400040847	Potato	cytosol	54.49	56.23
PGSC0003DMT400014810	Potato	mitochondrion	40.56	53.47
PGSC0003DMT400085601	Potato	plastid	24.46	49.07
PGSC0003DMT400069439	Potato	plastid	35.6	47.13
PGSC0003DMT400046811	Potato	plastid	47.99	46.83
PGSC0003DMT400031933	Potato	cytosol	48.61	46.59
PGSC0003DMT400039734	Potato	plastid	32.2	26.2
PGSC0003DMT400064369	Potato	plastid	32.2	26.13
PGSC0003DMT400047264	Potato	plastid	31.89	25.88
PGSC0003DMT400026316	Potato	cytosol	30.34	25.45
PGSC0003DMT400073742	Potato	cytosol	27.86	24.79

Protein Annotations

EnsemblPlants:PGSC0003DMT400049292	EnsemblPlantsGene:PGSC0003DMG400019158	EntrezGene:102604299	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
ncoils:Coil	PANTHER:PTHR24320	PANTHER:PTHR24320:SF81	PFAM:PF00106	PGSC:PGSC0003DMG400019158	PRINTS:PR00080
PRINTS:PR00081	RefSeq:XP_006349516.1	SEG:seg	SUPFAM:SSF51735	UniParc:UPI0002962F39	UniProt:M1BNI8
MapMan:35.1	:	:	:	:	:

Description

Short-chain dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400019158]

Coordinates

chr10:+:51386090..51389167

Molecular Weight (calculated)

35599.2 Da

IEP (calculated)

9.588

GRAVY (calculated)

-0.041

Length

323 amino acids

Sequence
(BLAST)

001: MLRLITGRRG ASGFGSASTA EEVTDGVDAT ALTVIITGGA SGIGLETTRV LALRKAHVIV AARNMEAANE AKQRILNENR TARIDILKLD LSSLKSVKAF
101: ADNFLALNLP LNILINNAGI MFCPFQLSED GIEMQFATNH LGHFYLTNFL LDKMKETAKS TGIEGRIVNL SSVAHLVCPR EGIRFHNIND KNSYQDKVAY
201: GQSKLANLLH ANELARRLQE EGANITVNSV HPGLIMTNLM RHSAFLMRIL RVFTCLLWKN VPQGAATTCY VALHPSLKGV TGKYFSDCNE YKPSKLARDE
301: VLARNLWDFS NNLINASQKI IDK

Best Arabidopsis Sequence Match ( AT5G02540.1 )
(BLAST)

001: MGLYSLITGR RGPSGFGSAS TAEEVTQGID ATNLTAIITG GTGGIGMETA RVLSKRGAHV VIGARNMGAA ENAKTEILRQ NANARVTLLQ LDLSSIKSIK
101: AFVREFHALH LPLNLLINNA GVMFCPYQLS EDGIELQFAT NHIGHFLLTN LLLDTMKNTA KTSGVEGRIL NVSSVAHIYT YQEGIQFDSI NDICSYSDKR
201: AYGQSKLANI LHANELSRQL QEEGVNITAN SVHPGLILTN LFQHTALLMR FLKFFSFYLW KNIPQGAATT CYVALHPSVK GVTGKYFADC NEVTPSKLAR
301: DETLAQKLWD FSVKLINSVS KKNYLGFDDT T

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KCF2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.