CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
plastid 4
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32305	Soybean	plastid	91.95	91.95
KRG95813	Soybean	nucleus	81.11	81.11
KRH67540	Soybean	nucleus	81.11	81.11
Solyc10g086390.1.1	Tomato	mitochondrion	73.06	73.06
VIT_08s0040g03400.t01	Wine grape	plastid	72.76	72.53
PGSC0003DMT400049292	Potato	mitochondrion	71.52	71.52
GSMUA_Achr8P20890_001	Banana	cytosol, mitochondrion, plastid	70.59	71.25
PGSC0003DMT400022813	Potato	mitochondrion	70.59	71.25
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	70.59	71.03
GSMUA_Achr11P...	Banana	cytosol	71.21	70.99
CDY68648	Canola	cytosol	45.82	70.81
GSMUA_Achr7P15240_001	Banana	plastid	70.59	70.37
Solyc09g010510.2.1	Tomato	cytosol, mitochondrion, plastid	69.04	69.69
CDY40365	Canola	mitochondrion	70.59	68.88
Bra009580.1-P	Field mustard	mitochondrion	70.59	68.88
AT5G02540.1	Thale cress	mitochondrion	70.28	68.58
CDY10440	Canola	plastid	68.73	68.31
Bra017180.1-P	Field mustard	cytosol	67.8	68.22
CDY18436	Canola	cytosol	67.49	67.91
Bra005188.1-P	Field mustard	cytosol	66.56	67.82
CDY52816	Canola	cytosol	67.18	67.81
CDX81232	Canola	cytosol	67.18	67.6
CDX74954	Canola	cytosol	66.87	67.5
CDY11217	Canola	mitochondrion	69.04	67.37
Bra005729.1-P	Field mustard	mitochondrion	69.04	67.37
Zm00001d039848_P002	Maize	cytosol, mitochondrion, plastid	66.56	67.19
CDY52817	Canola	cytosol	66.56	67.19
EES02479	Sorghum	cytosol, plastid	66.56	67.19
AT2G37540.1	Thale cress	cytosol	66.56	66.98
TraesCS3B01G091800.3	Wheat	cytosol	65.63	66.25
TraesCS5D01G287000.1	Wheat	plastid	65.94	66.15
Os01t0151700-01	Rice	cytosol	65.63	66.04
TraesCS5B01G279400.1	Wheat	plastid	65.63	65.84
TraesCS5A01G280400.1	Wheat	plastid	65.02	65.22
CDY55418	Canola	cytosol	59.44	64.21
CDX88292	Canola	cytosol	30.34	62.42
TraesCS3A01G077400.2	Wheat	cytosol, plastid	65.02	60.0
HORVU3Hr1G013970.6	Barley	plastid	64.4	58.59
CDY10441	Canola	cytosol, extracellular, mitochondrion, plastid	24.46	57.66
KRG91556	Soybean	cytosol	55.42	57.19
KRH08898	Soybean	cytosol	54.8	56.01
KRH08897	Soybean	cytosol, mitochondrion	54.18	55.73
KRH08894	Soybean	plastid	37.15	55.3
KRH59919	Soybean	cytosol, plastid	53.87	55.24
KRH41194	Soybean	cytosol, plastid	53.56	54.92
KRH38419	Soybean	plastid	54.18	54.86
KRH38433	Soybean	cytosol	53.87	54.55
HORVU5Hr1G075530.8	Barley	cytosol, nucleus, plastid	65.02	54.12
TraesCS3D01G077500.2	Wheat	cytosol, plastid	58.51	54.0
KRH38432	Soybean	cytosol	52.94	53.6
KRH38431	Soybean	plastid	52.94	52.94
Zm00001d039397_P001	Maize	cytosol	39.63	52.67
KRH35271	Soybean	plastid	56.66	52.44
KRH35274	Soybean	cytosol, mitochondrion, plastid	55.42	49.86
KRH38426	Soybean	cytosol	49.54	49.08
KRG91557	Soybean	cytosol	30.65	47.6
KRH54355	Soybean	cytosol	48.61	47.58
KRH57109	Soybean	mitochondrion	47.99	45.99
KRH41377	Soybean	cytosol	47.99	45.99
KRH03249	Soybean	mitochondrion, plastid	47.68	45.7
KRH08895	Soybean	cytosol	52.94	44.76
KRH63592	Soybean	plastid	48.3	43.82
KRH55334	Soybean	plastid	34.06	27.57
KRH26074	Soybean	plastid	27.86	26.32
KRH27209	Soybean	nucleus, plastid	32.2	26.07
KRH38907	Soybean	endoplasmic reticulum	30.34	25.93
KRH09442	Soybean	cytosol	30.03	25.73

Protein Annotations

EntrezGene:100807056	Gene3D:3.40.50.720	MapMan:35.1	EMBL:ACUP02008197	EnsemblPlantsGene:GLYMA_13G131400	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	UniProt:I1LYU4
EnsemblPlants:KRH19708	ProteinID:KRH19708	ProteinID:KRH19708.1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	PRINTS:PR00080
PRINTS:PR00081	PANTHER:PTHR24320	PANTHER:PTHR24320:SF81	InterPro:SDR_fam	SUPFAM:SSF51735	UniParc:UPI000233AAD4
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:24407233..24412557

Molecular Weight (calculated)

35340.7 Da

IEP (calculated)

7.250

GRAVY (calculated)

-0.025

Length

323 amino acids

Sequence
(BLAST)

001: MVGIFSLITG RPGCSGFGSS STAEQVIEGI DASNLTAIIT GGASGIGLET ARVLAIRKAH VIIAARNMES AKEAKQLILE EDESARVDIM KLDLCSVKSV
101: GTFVDNFIAL GVPLNILINN AGVMFCPYQQ TEDGIEMQFA TNHLGHFLLT KLLLDKMKQT AKDTGIEGRI INLSSIAHVY TYEEGIRFDN INDEDGYSDK
201: KAYGQSKLAN ILHTNELSRR LQAEGVNITA NSVHPGVIMT PLMRHSSLLM NFLKMFTFFA WKNIPQGAAT TCYVALHPSL KGVTGKYFRD CNECQPSTHA
301: SNELLGRKLW DFSNKMINSL SKA

Best Arabidopsis Sequence Match ( AT5G02540.1 )
(BLAST)

001: MGLYSLITGR RGPSGFGSAS TAEEVTQGID ATNLTAIITG GTGGIGMETA RVLSKRGAHV VIGARNMGAA ENAKTEILRQ NANARVTLLQ LDLSSIKSIK
101: AFVREFHALH LPLNLLINNA GVMFCPYQLS EDGIELQFAT NHIGHFLLTN LLLDTMKNTA KTSGVEGRIL NVSSVAHIYT YQEGIQFDSI NDICSYSDKR
201: AYGQSKLANI LHANELSRQL QEEGVNITAN SVHPGLILTN LFQHTALLMR FLKFFSFYLW KNIPQGAATT CYVALHPSVK GVTGKYFADC NEVTPSKLAR
301: DETLAQKLWD FSVKLINSVS KKNYLGFDDT T

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KCF2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.