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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH09442 Soybean cytosol 97.09 97.35
VIT_17s0000g00520.t01 Wine grape cytosol, mitochondrion, peroxisome 77.78 79.25
Solyc03g098460.2.1 Tomato cytosol 75.93 74.55
PGSC0003DMT400026316 Potato cytosol 75.13 73.77
CDX89228 Canola cytosol, nucleus, peroxisome 70.9 71.85
Bra026308.1-P Field mustard cytosol, nucleus, peroxisome 70.63 71.58
CDX92838 Canola cytosol 60.58 71.56
CDY19025 Canola cytosol 70.37 71.31
AT4G27760.1 Thale cress cytosol 69.58 69.95
AT5G53090.1 Thale cress cytosol 69.31 69.87
AT5G53100.1 Thale cress cytosol, golgi, mitochondrion, plasma membrane 65.34 67.86
Os02t0116500-01 Rice cytosol 70.11 66.25
GSMUA_Achr7P04190_001 Banana cytosol 71.16 65.61
Bra029096.1-P Field mustard nucleus 65.08 65.08
CDY64354 Canola cytosol 38.36 63.88
TraesCS6A01G045200.1 Wheat cytosol 66.4 61.82
TraesCS6D01G051500.1 Wheat cytosol 66.67 61.61
TraesCS6B01G060600.1 Wheat cytosol 66.4 61.07
Bra022628.1-P Field mustard cytosol, mitochondrion 64.55 60.85
Bra019028.1-P Field mustard cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 65.34 60.84
Zm00001d054039_P001 Maize cytosol 66.67 60.58
EES04360 Sorghum cytosol 66.93 59.81
CDY29859 Canola endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole 57.14 59.02
CDX96191 Canola mitochondrion 66.4 57.05
CDY27027 Canola golgi, mitochondrion, nucleus 66.14 55.8
Zm00001d014994_P001 Maize cytosol 65.61 52.1
KRH38419 Soybean plastid 28.31 33.54
KRH59919 Soybean cytosol, plastid 26.98 32.38
KRH41194 Soybean cytosol, plastid 26.19 31.43
KRG91556 Soybean cytosol 25.93 31.31
KRG95813 Soybean nucleus 26.45 30.96
KRH08897 Soybean cytosol, mitochondrion 25.66 30.89
KRH08894 Soybean plastid 17.72 30.88
KRH08898 Soybean cytosol 25.4 30.38
KRH19708 Soybean nucleus 25.93 30.34
KRH67540 Soybean nucleus 25.93 30.34
KRH38433 Soybean cytosol 25.4 30.09
KRG91557 Soybean cytosol 16.4 29.81
KRH32305 Soybean plastid 25.13 29.41
CDY38726 Canola cytosol, golgi, plastid 63.76 28.97
KRH35271 Soybean plastid 26.72 28.94
KRH38432 Soybean cytosol 23.81 28.21
KRH35274 Soybean cytosol, mitochondrion, plastid 26.72 28.13
KRH54355 Soybean cytosol 24.34 27.88
KRH38426 Soybean cytosol 23.81 27.61
KRH57109 Soybean mitochondrion 24.6 27.6
KRH41377 Soybean cytosol 24.6 27.6
KRH03249 Soybean mitochondrion, plastid 24.34 27.3
KRH38431 Soybean plastid 23.28 27.24
KRH63592 Soybean plastid 24.07 25.56
KRH08895 Soybean cytosol 25.13 24.87
KRH55334 Soybean plastid 23.02 21.8
KRH27209 Soybean nucleus, plastid 22.22 21.05
KRH26074 Soybean plastid 18.78 20.76
Protein Annotations
EntrezGene:100782533Gene3D:3.40.50.720MapMan:35.1EMBL:ACUP02005890EnsemblPlantsGene:GLYMA_09G166100GO:GO:0003674
GO:GO:0003824GO:GO:0008150GO:GO:0008152GO:GO:0016491GO:GO:0055114UniProt:I1L3W9
EnsemblPlants:KRH38907ProteinID:KRH38907ProteinID:KRH38907.1InterPro:NAD(P)-bd_dom_sfPFAM:PF00106PRINTS:PR00080
PRINTS:PR00081PANTHER:PTHR24320PANTHER:PTHR24320:SF73InterPro:SDR_famSUPFAM:SSF51735UniParc:UPI0002338A55
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr9:+:39002726..39010659
Molecular Weight (calculated)
41948.3 Da
IEP (calculated)
5.962
GRAVY (calculated)
-0.105
Length
378 amino acids
Sequence
(BLAST)
001: MATTTSSSSE EAPNTKKNKK ERLGWIEWLR GWFYLVYEML FQRIMASHLH NPMPLPPVND LTCIVTGSTS GIGLEIARQL AQSGAHVVMA VRNTKAAQEL
101: IQKWQVDSEG LSIPLNVEVM QVDLLSLDSV TRFAEAWNAR SAPLHVLINN AGIFSIGEPQ KFSKDGYEQH LQVNHLAPAL LSILLLPSLI RGSPSRIVNV
201: NSIMHHVGFV DTEDMNVTSG KRKFSSLVGY SSSKLAEIMF SSILNKRLPA ESGISVLCVS PGIVQTNVAR DLPKLVQAAY HLIPYFIFSA QEGARSALFA
301: ATDPQVPEYC DMLKADEWPV CAFISQDCRP ANPSEEAHNV QTSYEVWEKT LEMIGLPSDA VERLLDGEEV KSHYRQEQ
Best Arabidopsis Sequence Match ( AT4G27760.1 )
(BLAST)
001: MSDETTSSPS PAPAKKKQNL GWMEWMRGWS SVFGEILFQR ITASHLENPL PLPSVNDLTC VVTGSTSGIG RETARQLAEA GAHVVMAVRN TKAAQELILQ
101: WQNEWSGKGL PLNIEAMEID LLSLDSVARF AEAFNARLGP LHVLINNAGM FAMGEAQKFS EEGYEQHMQV NHLAPALLSV LLLPSLIRGS PSRIINVNSV
201: MHSVGFVDPD DMNVVSGRRK YSSLIGYSSS KLAQIMFSSI LFKKLPLETG VSVVCLSPGV VLTNVARDLS RILQALYAVI PYFIFSPQEG CRSSLFSATD
301: PQIPEYWETL KNDDWPVCPF ISQDCRPANP SEEAHNTETA QRVWKKTLEL VGLPLDAVEK LIEGENIQCR YGAQHE
Arabidopsis Description
FEYDehydrogenase/reductase SDR family member FEY [Source:UniProtKB/Swiss-Prot;Acc:F4JJR8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.