Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G53100.1 | Thale cress | cytosol, golgi, mitochondrion, plasma membrane | 74.67 | 76.92 |
| Bra022628.1-P | Field mustard | cytosol, mitochondrion | 81.33 | 76.06 |
| AT4G27760.1 | Thale cress | cytosol | 75.73 | 75.53 |
| VIT_17s0000g00520.t01 | Wine grape | cytosol, mitochondrion, peroxisome | 74.4 | 75.2 |
| CDX96191 | Canola | mitochondrion | 84.53 | 72.05 |
| CDY27027 | Canola | golgi, mitochondrion, nucleus | 85.33 | 71.43 |
| KRH09442 | Soybean | cytosol | 70.4 | 70.03 |
| PGSC0003DMT400026316 | Potato | cytosol | 71.73 | 69.87 |
| Solyc03g098460.2.1 | Tomato | cytosol | 71.47 | 69.61 |
| KRH38907 | Soybean | endoplasmic reticulum | 69.87 | 69.31 |
| Os02t0116500-01 | Rice | cytosol | 65.07 | 61.0 |
| GSMUA_Achr7P04190_001 | Banana | cytosol | 66.13 | 60.49 |
| TraesCS6A01G045200.1 | Wheat | cytosol | 63.2 | 58.37 |
| TraesCS6D01G051500.1 | Wheat | cytosol | 63.47 | 58.19 |
| TraesCS6B01G060600.1 | Wheat | cytosol | 63.2 | 57.66 |
| Zm00001d054039_P001 | Maize | cytosol | 62.4 | 56.25 |
| EES04360 | Sorghum | cytosol | 62.4 | 55.32 |
| Zm00001d014994_P001 | Maize | cytosol | 61.07 | 48.11 |
| AT4G23430.2 | Thale cress | plastid | 29.07 | 33.85 |
| AT4G23420.3 | Thale cress | plastid | 27.73 | 31.23 |
| AT4G11410.1 | Thale cress | cytosol, mitochondrion | 25.6 | 30.28 |
| AT2G37540.1 | Thale cress | cytosol | 25.87 | 30.22 |
| AT1G64590.1 | Thale cress | plastid | 26.67 | 29.94 |
| AT4G24050.1 | Thale cress | cytosol | 25.87 | 29.22 |
| AT5G02540.1 | Thale cress | mitochondrion | 24.8 | 28.1 |
| AT5G50130.1 | Thale cress | mitochondrion | 25.33 | 28.02 |
| AT5G54190.1 | Thale cress | plastid | 23.2 | 21.48 |
| AT4G27440.1 | Thale cress | plastid | 22.93 | 21.45 |
| AT1G03630.1 | Thale cress | plastid | 22.4 | 20.95 |
Protein Annotations
| Gene3D:3.40.50.720 | MapMan:35.1 | EntrezGene:835389 | ProteinID:AED96302.1 | ArrayExpress:AT5G53090 | EnsemblPlantsGene:AT5G53090 |
| RefSeq:AT5G53090 | TAIR:AT5G53090 | RefSeq:AT5G53090-TAIR-G | EnsemblPlants:AT5G53090.1 | TAIR:AT5G53090.1 | Unigene:At.29573 |
| EMBL:BT015341 | EMBL:BT015851 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016491 | GO:GO:0055114 | InterPro:NAD(P)-bd_dom_sf | RefSeq:NP_200121.4 | PFAM:PF00106 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PRINTS:PR00080 | PRINTS:PR00081 |
| PANTHER:PTHR24320 | PANTHER:PTHR24320:SF73 | UniProt:Q66GR1 | InterPro:SDR_fam | SUPFAM:SSF51735 | UniParc:UPI00001970CE |
| SEG:seg | : | : | : | : | : |
Description
At5g53090 [Source:UniProtKB/TrEMBL;Acc:Q66GR1]
Coordinates
chr5:+:21523365..21525713
Molecular Weight (calculated)
41945.9 Da
IEP (calculated)
8.225
GRAVY (calculated)
-0.134
Length
375 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSETSSLTK KMKKKKEGLG WIESIKGWSC VFHEFLFQRF MASHLQNPLP LPSLNHLTCI VTGSTSGIGR ETARQLAEAG ARVVMAVRNT KAAHELIQQW
101: QKEWSGKGIP LNLEAMELDL LSLDSVVGFC NLWNARLSPL HVLINNAGIF SMGEEQKFSK DGYEQHMQVN HLAPALLSLL LLPSLIRGSP SRIINVNSVM
201: HYVGFVDPDD MNVVSGKRKF TSLVGYSGSK LAQVMFSNVL LKRLPLETRI SVVCLSPGIV LTNVARDLPR YVQVQYALIP YFIFSPQEGS RSTLFSATDA
301: QIPEHCEKLK TEDKPVCTFI SQNCKHTKPS EEAHNVETAE RVWEKTIKLI GLPLDAVERL IEGEEVQCRY GTHQQ
101: QKEWSGKGIP LNLEAMELDL LSLDSVVGFC NLWNARLSPL HVLINNAGIF SMGEEQKFSK DGYEQHMQVN HLAPALLSLL LLPSLIRGSP SRIINVNSVM
201: HYVGFVDPDD MNVVSGKRKF TSLVGYSGSK LAQVMFSNVL LKRLPLETRI SVVCLSPGIV LTNVARDLPR YVQVQYALIP YFIFSPQEGS RSTLFSATDA
301: QIPEHCEKLK TEDKPVCTFI SQNCKHTKPS EEAHNVETAE RVWEKTIKLI GLPLDAVERL IEGEEVQCRY GTHQQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.