Factsheet for GSMUA_Achr7P04190_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38907	Soybean	endoplasmic reticulum	65.61	71.16
VIT_17s0000g00520.t01	Wine grape	cytosol, mitochondrion, peroxisome	64.39	71.16
KRH09442	Soybean	cytosol	65.37	71.09
Os02t0116500-01	Rice	cytosol	69.27	71.0
CDX92838	Canola	cytosol	55.37	70.94
CDX89228	Canola	cytosol, nucleus, peroxisome	61.95	68.1
Bra026308.1-P	Field mustard	cytosol, nucleus, peroxisome	61.71	67.83
CDY19025	Canola	cytosol	61.71	67.83
PGSC0003DMT400026316	Potato	cytosol	63.66	67.79
Solyc03g098460.2.1	Tomato	cytosol	63.41	67.53
TraesCS6A01G045200.1	Wheat	cytosol	66.59	67.24
AT4G27760.1	Thale cress	cytosol	61.46	67.02
TraesCS6D01G051500.1	Wheat	cytosol	66.59	66.75
TraesCS6B01G060600.1	Wheat	cytosol	66.59	66.42
AT5G53090.1	Thale cress	cytosol	60.49	66.13
Zm00001d054039_P001	Maize	cytosol	67.07	66.11
EES04360	Sorghum	cytosol	66.83	64.78
AT5G53100.1	Thale cress	cytosol, golgi, mitochondrion, plasma membrane	56.1	63.19
Bra029096.1-P	Field mustard	nucleus	55.85	60.58
CDY64354	Canola	cytosol	32.93	59.47
Bra019028.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	58.78	59.36
Bra022628.1-P	Field mustard	cytosol, mitochondrion	57.32	58.6
CDY29859	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	51.95	58.2
Zm00001d014994_P001	Maize	cytosol	65.61	56.51
CDX96191	Canola	mitochondrion	59.02	55.0
CDY27027	Canola	golgi, mitochondrion, nucleus	59.27	54.24
GSMUA_Achr2P08080_001	Banana	mitochondrion	25.37	32.0
GSMUA_AchrUn_...	Banana	cytosol	24.15	31.63
GSMUA_Achr2P18620_001	Banana	plastid	24.15	31.33
GSMUA_Achr7P15240_001	Banana	plastid	23.66	29.94
GSMUA_Achr8P20890_001	Banana	cytosol, mitochondrion, plastid	23.17	29.69
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	22.93	29.28
GSMUA_Achr8P11870_001	Banana	cytosol	23.9	28.82
GSMUA_Achr11P...	Banana	cytosol	22.44	28.4
CDY38726	Canola	cytosol, golgi, plastid	57.07	28.12
GSMUA_Achr1P25440_001	Banana	cytosol	20.0	26.62
GSMUA_Achr11P...	Banana	cytosol	22.2	26.38
GSMUA_Achr7P04280_001	Banana	plastid	22.44	23.12
GSMUA_Achr3P14270_001	Banana	plastid	21.22	22.48
GSMUA_Achr11P...	Banana	plastid	20.98	21.72
GSMUA_Achr3P22130_001	Banana	cytosol	25.12	14.63
GSMUA_AchrUn_...	Banana	cytosol	8.29	13.39

Protein Annotations

EnsemblPlants:GSMUA_Achr7P04190_001	EnsemblPlants:GSMUA_Achr7T04190_001	EnsemblPlantsGene:GSMUA_Achr7G04190_001	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
PANTHER:PTHR24320	PANTHER:PTHR24320:SF73	PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081	SEG:seg
SUPFAM:SSF51735	UniParc:UPI0002955B11	UniProt:M0TEK9	MapMan:35.1	:	:

Description

Putative Retinol dehydrogenase 12 [Source:GMGC_GENE;Acc:GSMUA_Achr7G04190_001]

Coordinates

chr7:-:3238844..3249965

Molecular Weight (calculated)

45066.2 Da

IEP (calculated)

5.892

GRAVY (calculated)

0.056

Length

410 amino acids

Sequence
(BLAST)

001: MMISHITADR KKEALGWIEW GRGWCSIIGE FLFQRIAASH VENPLPVPPL DGLTCIVTGA TSGIGLEIAR QLAESGAHVV MAVRRTKLAH ELIQDWQNDK
101: SEIGLTLNVE AMELDLLSLD SVVRFAEAWN ARMVPLNVLI NNAGIFAIGE PQRFSMDGYE EHMQVNHLAP ALLSLLLLPS LLRGSPSRII NVNSIMHFVG
201: YVDTHDMNMT SGRSKYTSLE GYSSSKLAQV KFTSILHKRI PAEAGISVLC VSPGIVHTNV ARDLPKVIVA AYHLIPYFIF SALEGSRSTL FAATDPQVPE
301: YCSVLKAEEW PVCAYISYDC RPINASEEAH NLKTSQDVWE KTLELIGLPS DALNKLIEGE AVQCQIIRIT SKSVECGQTQ SCTSYSANLC SYTCKHTTNV
401: ELASSNCESS

Best Arabidopsis Sequence Match ( AT4G27760.1 )
(BLAST)

001: MSDETTSSPS PAPAKKKQNL GWMEWMRGWS SVFGEILFQR ITASHLENPL PLPSVNDLTC VVTGSTSGIG RETARQLAEA GAHVVMAVRN TKAAQELILQ
101: WQNEWSGKGL PLNIEAMEID LLSLDSVARF AEAFNARLGP LHVLINNAGM FAMGEAQKFS EEGYEQHMQV NHLAPALLSV LLLPSLIRGS PSRIINVNSV
201: MHSVGFVDPD DMNVVSGRRK YSSLIGYSSS KLAQIMFSSI LFKKLPLETG VSVVCLSPGV VLTNVARDLS RILQALYAVI PYFIFSPQEG CRSSLFSATD
301: PQIPEYWETL KNDDWPVCPF ISQDCRPANP SEEAHNTETA QRVWKKTLEL VGLPLDAVEK LIEGENIQCR YGAQHE

Arabidopsis Description

FEYDehydrogenase/reductase SDR family member FEY [Source:UniProtKB/Swiss-Prot;Acc:F4JJR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.