Factsheet for GSMUA_Achr1P25440_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr8P24650_001
GSMUA_Achr9P14100_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50130.1	GSMUA_Achr8P24650_001	AT5G39730.1	21798944
AT5G50130.1	GSMUA_Achr9P14100_001	AT5G39730.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g08920.t01	Wine grape	cytosol	67.86	63.33
KRH54355	Soybean	cytosol	66.23	61.82
PGSC0003DMT400046811	Potato	plastid	65.91	61.33
KRH57109	Soybean	mitochondrion	66.56	60.83
KRH03249	Soybean	mitochondrion, plastid	66.23	60.53
PGSC0003DMT400069439	Potato	plastid	46.43	58.61
KRH63592	Soybean	plastid	64.94	56.18
Solyc03g112540.2.1	Tomato	endoplasmic reticulum	65.58	56.11
AT5G50130.1	Thale cress	mitochondrion	60.06	54.57
Solyc06g071610.1.1	Tomato	plastid	64.61	54.37
GSMUA_Achr8P11870_001	Banana	cytosol	50.97	46.18
GSMUA_Achr11P...	Banana	cytosol	50.97	45.51
GSMUA_Achr11P...	Banana	cytosol	46.75	44.44
GSMUA_Achr7P15240_001	Banana	plastid	44.48	42.28
GSMUA_AchrUn_...	Banana	cytosol	42.86	42.17
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	43.83	42.06
GSMUA_Achr8P20890_001	Banana	cytosol, mitochondrion, plastid	43.51	41.88
CDX71585	Canola	mitochondrion	45.45	41.3
GSMUA_Achr2P08080_001	Banana	mitochondrion	41.56	39.38
GSMUA_Achr2P18620_001	Banana	plastid	39.61	38.61
Bra037939.1-P	Field mustard	cytosol	57.14	35.41
CDY37755	Canola	mitochondrion, plastid	57.79	28.57
GSMUA_Achr11P...	Banana	plastid	27.6	21.46
GSMUA_Achr3P14270_001	Banana	plastid	25.97	20.67
GSMUA_Achr7P04280_001	Banana	plastid	26.3	20.35
GSMUA_Achr7P04190_001	Banana	cytosol	26.62	20.0
GSMUA_Achr3P22130_001	Banana	cytosol	42.21	18.47
GSMUA_AchrUn_...	Banana	cytosol	9.42	11.42

Protein Annotations

EnsemblPlants:GSMUA_Achr1P25440_001	EnsemblPlants:GSMUA_Achr1T25440_001	EnsemblPlantsGene:GSMUA_Achr1G25440_001	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
PANTHER:PTHR24320	PANTHER:PTHR24320:SF120	PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081	SUPFAM:SSF51735
UniParc:UPI000295F737	UniProt:M0S301	MapMan:35.1	:	:	:

Description

Putative Retinol dehydrogenase 14 [Source:GMGC_GENE;Acc:GSMUA_Achr1G25440_001]

Coordinates

chr1:+:19797528..19799041

Molecular Weight (calculated)

34233.8 Da

IEP (calculated)

10.240

GRAVY (calculated)

-0.112

Length

308 amino acids

Sequence
(BLAST)

001: MNITLVSVIE GATSGIGAET ARVLAKRGLR LVIPARDLKR AAEVKDWIQG ESPEAEIILM EMDLSSFASI NRFCSMFLSL GLPLNILVNN AGKYCKKLQL
101: TEDKFEMTFA TNYLGKKDMH ACRHYLLTEN LLEKMIETSA RTGIEGRIVN VSSVIHTWVK RGRFKLSHML NPKDFNGTQA YAQSKLANIM HAKELARTLR
201: GRNAMVTINA VHPGVVKTGI IRDHKGLITD SVFFLASRLL KSTSQGASTT CYVALSPQLI GVSGKYFVDC NETSCSSLAG NEFEARTLWQ KTHALVRDHV
301: RQTRRAKT

Best Arabidopsis Sequence Match ( AT5G50130.8 )
(BLAST)

001: MFDAYYFLTG GTSGIGAETA RVLAKRGVRV VMAVRDMKKA EMVKERIIRE NPEADIILFE IDLSSLSSVA RFCSQFLSQD LPLNILINNA GVFSPNLEFS
101: EEKIELTFAT NFLGHYLLTE MLIEKMIDTA EKSGIEGRII NLSSVIHNWV KPDCFSFPKL LHPIRYNGTR AYAQSKLATI LHAKALSKQL KDRNANVTIN
201: AVHPGIVKTG IIRAHKGLFT DSLFLIASKL LKSISQGAAT TCYVALSNET KGLSGKYFAD CNETNCSDLA NDEYVALKLC TQSRALIHDH LHEFQIHALP
301: NLCFL

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8RWK2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.