CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH52624
KRH61964

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50130.1	KRH52624	AT5G39730.1	21798944
AT5G50130.1	KRH61964	AT5G39730.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63592	Soybean	plastid	96.97	89.89
KRH57109	Soybean	mitochondrion	84.85	83.09
KRH03249	Soybean	mitochondrion, plastid	83.64	81.9
VIT_17s0000g08920.t01	Wine grape	cytosol	79.39	79.39
PGSC0003DMT400046811	Potato	plastid	74.55	74.32
PGSC0003DMT400069439	Potato	plastid	51.21	69.26
AT5G50130.1	Thale cress	mitochondrion	70.3	68.44
Solyc03g112540.2.1	Tomato	endoplasmic reticulum	73.64	67.5
GSMUA_Achr1P25440_001	Banana	cytosol	61.82	66.23
Solyc06g071610.1.1	Tomato	plastid	70.0	63.11
CDX71585	Canola	mitochondrion	56.97	55.46
KRH41377	Soybean	cytosol	51.82	50.74
KRH08894	Soybean	plastid	32.73	49.77
KRH32305	Soybean	plastid	48.18	49.23
KRH08898	Soybean	cytosol	46.67	48.73
KRH19708	Soybean	nucleus	47.58	48.61
KRG95813	Soybean	nucleus	47.58	48.61
KRH67540	Soybean	nucleus	47.27	48.3
KRH38432	Soybean	cytosol	46.67	48.28
KRH08897	Soybean	cytosol, mitochondrion	45.76	48.09
KRG91556	Soybean	cytosol	45.45	47.92
KRH38433	Soybean	cytosol	46.06	47.65
KRH38426	Soybean	cytosol	46.97	47.55
KRH38431	Soybean	plastid	46.06	47.06
KRH59919	Soybean	cytosol, plastid	44.55	46.67
KRH41194	Soybean	cytosol, plastid	43.94	46.03
KRH38419	Soybean	plastid	43.64	45.14
Bra037939.1-P	Field mustard	cytosol	67.58	44.87
KRH35271	Soybean	plastid	45.45	42.98
KRG91557	Soybean	cytosol	26.97	42.79
KRH35274	Soybean	cytosol, mitochondrion, plastid	45.45	41.78
KRH08895	Soybean	cytosol	45.76	39.53
CDY37755	Canola	mitochondrion, plastid	67.58	35.79
KRH09442	Soybean	cytosol	28.48	24.93
KRH38907	Soybean	endoplasmic reticulum	27.88	24.34
KRH55334	Soybean	plastid	28.18	23.31
KRH27209	Soybean	nucleus, plastid	27.58	22.81
KRH26074	Soybean	plastid	22.12	21.34

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	EMBL:ACUP02003514	ncoils:Coil	EnsemblPlantsGene:GLYMA_06G179800	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	UniProt:I1KCD5
EnsemblPlants:KRH54355	ProteinID:KRH54355	ProteinID:KRH54355.1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	PRINTS:PR00080
PRINTS:PR00081	PANTHER:PTHR24320	PANTHER:PTHR24320:SF120	InterPro:SDR_fam	SUPFAM:SSF51735	UniParc:UPI00023392D2

Description

hypothetical protein

Coordinates

chr6:+:15259437..15263577

Molecular Weight (calculated)

35937.6 Da

IEP (calculated)

9.880

GRAVY (calculated)

-0.072

Length

330 amino acids

Sequence
(BLAST)

001: MKATLRYLAG MAGPSGFGSN STAEQVTEDC SCFLPSALTA LITGASSGIG AETARVLAKR GVRVVIAARD LKKAKEVKKN IQKETPKAEV ILLEIDLGSF
101: GSVQRFCSEF LALELPLNIL INNAGMFSQN LEFSEDKIEM TFATNYLGHF LLTEILLDKM IETAEKTGIQ GRIINVSSVI HSWVKKGGFR FNDILSGKKY
201: NGTRAYAQSK LANILHAKEI AKQLKARNER VTINAVHPGI VKTGIIRAHK GLITDSLFFI ASKLLKTTSQ GASTTCYVAL SPKTEGISGK YFADCNESKC
301: SSLANDESEA QTLWNNTHAL LQKRLRQATI

Best Arabidopsis Sequence Match ( AT5G50130.1 )
(BLAST)

001: MKGTLRYLAG IAGPNGFGSR STAEQVTQHS FFPCSHLTAI ITGGTSGIGA ETARVLAKRG VRVVMAVRDM KKAEMVKERI IRENPEADII LFEIDLSSLS
101: SVARFCSQFL SQDLPLNILI NNAGVFSPNL EFSEEKIELT FATNFLGHYL LTEMLIEKMI DTAEKSGIEG RIINLSSVIH NWVKPDCFSF PKLLHPISRY
201: NGTRAYAQSK LATILHAKAL SKQLKDRNAN VTINAVHPGI VKTGIIRAHK GLFTDSLFLI ASKLLKSISQ GAATTCYVAL SNETKGLSGK YFADCNETNC
301: SDLANDEYVA LKLCTQSRAL IHDHLHEFQI HALPNLCFL

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8RWK2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.