Factsheet for Solyc03g112540.2.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytoskeleton, cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytoskeleton
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc08g006070.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50130.1	Solyc08g006070.2.1	AT5G39730.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046811	Potato	plastid	90.28	98.19
VIT_17s0000g08920.t01	Wine grape	cytosol	71.67	78.18
Solyc06g071610.1.1	Tomato	plastid	76.39	75.14
KRH54355	Soybean	cytosol	67.5	73.64
KRH03249	Soybean	mitochondrion, plastid	66.39	70.92
KRH57109	Soybean	mitochondrion	66.39	70.92
KRH63592	Soybean	plastid	68.06	68.82
AT5G50130.1	Thale cress	mitochondrion	63.61	67.55
GSMUA_Achr1P25440_001	Banana	cytosol	56.11	65.58
Solyc08g082870.2.1	Tomato	cytosol	50.56	54.01
CDX71585	Canola	mitochondrion	50.83	53.98
Solyc10g086390.1.1	Tomato	mitochondrion	43.89	48.92
Solyc09g010510.2.1	Tomato	cytosol, mitochondrion, plastid	42.5	47.81
Solyc03g025410.2.1	Tomato	nucleus	40.83	46.96
Solyc03g025370.2.1	Tomato	cytosol, nucleus, plastid	40.56	46.65
Solyc08g008060.1.1	Tomato	cytosol	40.0	45.71
Solyc08g081200.2.1	Tomato	cytosol	40.0	45.71
Solyc03g025390.2.1	Tomato	cytosol	39.72	45.69
Solyc03g025400.2.1	Tomato	cytosol	38.89	44.3
Bra037939.1-P	Field mustard	cytosol	60.56	43.86
CDY37755	Canola	mitochondrion, plastid	60.56	34.99
Solyc12g042640.1.1	Tomato	cytosol	24.44	24.24
Solyc03g098460.2.1	Tomato	cytosol	25.83	24.16
Solyc07g054210.2.1	Tomato	plastid	25.0	22.56
Solyc10g006900.2.1	Tomato	plastid	23.33	21.27
Solyc12g013710.1.1	Tomato	extracellular, nucleus, plastid	23.33	21.16

Protein Annotations

EnsemblPlants:Solyc03g112540.2.1	EnsemblPlantsGene:Solyc03g112540.2	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	PANTHER:PTHR24320
PANTHER:PTHR24320:SF120	PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081	SEG:seg	SUPFAM:SSF51735
UniParc:UPI0002767684	UniProt:K4BKA7	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr3:+:62931547..62935867

Molecular Weight (calculated)

40242.6 Da

IEP (calculated)

9.900

GRAVY (calculated)

-0.128

Length

360 amino acids

Sequence
(BLAST)

001: MDFHKFDRAF YIYVVFQYCY SKFQNFGVMK ATLKYLAGIA GPSGYGSKTT AEQATKDFSN SSNSQLTAII TGATSGIGAE TARVLAKRGV RIVLPARDLK
101: KAEILKEFIQ KETPMAQIIL LEIDLSSFAS IQRFSAEFLS LQLPLHILIN NAGKFSQKLE FSEDKIEMTF ATNYLGHFLL TELLLEKMVE TAEGCGIEGR
201: IVNVTSVVHN WVKRDQFRFS QLLNPKKYYN GTRAYAQSKL ANILHAKELS RQLKARNANV TINAVHPGIV KTGIIRDHKG FITDSLYFMA SKLLKSTSQG
301: AASTCYVALS PQTEGMSGKY FADCNESHSS VLANDEIEAH KLWKGTRVLI HRRFLPHVNS

Best Arabidopsis Sequence Match ( AT5G50130.1 )
(BLAST)

001: MKGTLRYLAG IAGPNGFGSR STAEQVTQHS FFPCSHLTAI ITGGTSGIGA ETARVLAKRG VRVVMAVRDM KKAEMVKERI IRENPEADII LFEIDLSSLS
101: SVARFCSQFL SQDLPLNILI NNAGVFSPNL EFSEEKIELT FATNFLGHYL LTEMLIEKMI DTAEKSGIEG RIINLSSVIH NWVKPDCFSF PKLLHPISRY
201: NGTRAYAQSK LATILHAKAL SKQLKDRNAN VTINAVHPGI VKTGIIRAHK GLFTDSLFLI ASKLLKSISQ GAATTCYVAL SNETKGLSGK YFADCNETNC
301: SDLANDEYVA LKLCTQSRAL IHDHLHEFQI HALPNLCFL

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8RWK2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.