CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74433
CDY56031

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50130.1	CDX74433	AT5G39730.1	21798944
AT5G50130.1	CDY56031	AT5G39730.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G50130.1	Thale cress	mitochondrion	71.09	71.09
KRH03249	Soybean	mitochondrion, plastid	57.23	57.57
KRH57109	Soybean	mitochondrion	56.93	57.27
KRH54355	Soybean	cytosol	55.46	56.97
VIT_17s0000g08920.t01	Wine grape	cytosol	53.98	55.45
PGSC0003DMT400046811	Potato	plastid	53.69	54.98
KRH63592	Soybean	plastid	56.05	53.37
Solyc03g112540.2.1	Tomato	endoplasmic reticulum	53.98	50.83
PGSC0003DMT400069439	Potato	plastid	34.51	47.95
Solyc06g071610.1.1	Tomato	plastid	51.03	47.27
GSMUA_Achr1P25440_001	Banana	cytosol	41.3	45.45
CDY37755	Canola	mitochondrion, plastid	78.47	42.7
CDY68648	Canola	cytosol	26.25	42.58
CDY10985	Canola	cytosol	40.41	41.27
CDX76323	Canola	cytosol	40.12	40.96
CDX81232	Canola	cytosol	38.05	40.19
CDY18436	Canola	cytosol	37.76	39.88
CDY50440	Canola	mitochondrion	39.82	39.82
CDY52817	Canola	cytosol	37.17	39.38
CDY52816	Canola	cytosol	36.87	39.06
CDX74954	Canola	cytosol	36.87	39.06
CDY10440	Canola	plastid	37.17	38.77
CDY40365	Canola	mitochondrion	37.46	38.37
CDY53433	Canola	plastid	38.94	37.93
CDY11217	Canola	mitochondrion	36.28	37.16
CDY72089	Canola	cytosol	20.94	35.32
CDY53896	Canola	plastid	20.65	35.0
CDX86777	Canola	cytosol	32.45	34.7
CDY13264	Canola	cytosol	32.45	34.7
CDY72311	Canola	cytosol	20.65	34.65
CDY10884	Canola	plastid	32.45	34.16
CDX76338	Canola	cytosol, plastid	32.15	33.85
CDY55418	Canola	cytosol	29.79	33.78
CDX88292	Canola	cytosol	14.45	31.21
CDY69917	Canola	endoplasmic reticulum	28.02	31.15
CDY44096	Canola	mitochondrion, plastid	32.74	30.75
CDY10441	Canola	cytosol, extracellular, mitochondrion, plastid	10.62	26.28
CDY64354	Canola	cytosol	14.16	21.15
CDX98171	Canola	plastid	20.35	19.77
CDY18309	Canola	plastid	20.06	19.48
CDX92838	Canola	cytosol	17.4	18.44
CDY15470	Canola	plastid	21.53	18.34
CDY51384	Canola	plastid	21.53	18.34
CDY14325	Canola	plastid	21.83	18.32
CDY18175	Canola	plastid	21.53	18.25
CDX89877	Canola	plastid	21.53	18.25
CDY29311	Canola	plastid	21.24	18.14
CDX89249	Canola	plastid	21.24	18.14
CDY19025	Canola	cytosol	19.47	17.69
CDX89228	Canola	cytosol, nucleus, peroxisome	19.17	17.43
CDY29859	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	17.11	15.85
CDY47833	Canola	cytosol, nucleus, plastid	40.12	15.26
CDY08387	Canola	cytosol, nucleus, plastid	39.82	15.15
CDY70072	Canola	cytosol	7.37	14.97
CDY27027	Canola	golgi, mitochondrion, nucleus	19.76	14.96
CDX96191	Canola	mitochondrion	18.88	14.55
CDY29840	Canola	plastid	22.42	12.01
CDX92832	Canola	plastid	22.12	11.77
CDY38726	Canola	cytosol, golgi, plastid	21.24	8.65

Protein Annotations

EnsemblPlants:CDX71585	EnsemblPlantsGene:GSBRNA2T00152067001	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	PANTHER:PTHR24320
PANTHER:PTHR24320:SF120	PRINTS:PR00081	ProteinID:CDX71585	ProteinID:CDX71585.1	SUPFAM:SSF51735	UniParc:UPI0004EF0C62
MapMan:35.1	:	:	:	:	:

Description

BnaC09g26260D

Coordinates

chrLK031794:-:156139..162896

Molecular Weight (calculated)

38083.2 Da

IEP (calculated)

9.436

GRAVY (calculated)

-0.044

Length

339 amino acids

Sequence
(BLAST)

001: MKGTLRYLAG IAGPNGFGSR STAEQVTQHC FLPYSHLTAI ITGLSSLHFK WMISFEMLGI FKQFLWSRIS CVPFDETQVS ISSTKIKEPK FCCNTEAHHS
101: SPRIRNDIYI YIITFFFCRN NAGIFSPNLE FSEEKIELTF ATNFLGRHYL LTEMLIEKMI DTAKKSGIEG RVINLTSVIH SWVKPDCFSF PELLHPTKYN
201: GTKAYAQSKL ATILHAKALS RRLKDRNANV TINAVHPGIV KTGIIRAHKG LLTDSLFLIA SKLLKSVSQG AATTCYVALS NETKRISGKY FADSNETNCS
301: DLANDVSLAL KLCTNSHTLI HDYLHLSLPN LKKYNYICH

Best Arabidopsis Sequence Match ( AT5G50130.1 )
(BLAST)

001: MKGTLRYLAG IAGPNGFGSR STAEQVTQHS FFPCSHLTAI ITGGTSGIGA ETARVLAKRG VRVVMAVRDM KKAEMVKERI IRENPEADII LFEIDLSSLS
101: SVARFCSQFL SQDLPLNILI NNAGVFSPNL EFSEEKIELT FATNFLGHYL LTEMLIEKMI DTAEKSGIEG RIINLSSVIH NWVKPDCFSF PKLLHPISRY
201: NGTRAYAQSK LATILHAKAL SKQLKDRNAN VTINAVHPGI VKTGIIRAHK GLFTDSLFLI ASKLLKSISQ GAATTCYVAL SNETKGLSGK YFADCNETNC
301: SDLANDEYVA LKLCTQSRAL IHDHLHEFQI HALPNLCFL

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8RWK2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.