CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020819.1-P	Field mustard	cytosol, plastid	100.0	100.0
CDY69917	Canola	endoplasmic reticulum	89.13	94.1
CDY10884	Canola	plastid	85.71	85.71
CDY44096	Canola	mitochondrion, plastid	85.71	76.45
PGSC0003DMT400032133	Potato	cytosol	68.32	69.84
VIT_02s0025g03380.t01	Wine grape	cytosol	67.7	69.21
Solyc08g081200.2.1	Tomato	cytosol	67.39	68.89
KRH41194	Soybean	cytosol, plastid	66.46	67.94
KRH59919	Soybean	cytosol, plastid	66.46	67.94
CDY13264	Canola	cytosol	66.46	67.51
CDX86777	Canola	cytosol	65.84	66.88
GSMUA_AchrUn_...	Banana	cytosol	64.29	66.13
EER96376	Sorghum	mitochondrion, plastid	63.35	64.56
Os09t0570300-01	Rice	plasma membrane	62.11	63.29
GSMUA_Achr2P18620_001	Banana	plastid	61.18	62.34
TraesCS4D01G002700.2	Wheat	mitochondrion, plastid	60.56	61.9
TraesCS5B01G461100.1	Wheat	mitochondrion, plastid	22.05	61.74
TraesCS4D01G003200.1	Wheat	golgi	60.56	61.71
TraesCS4B01G002900.1	Wheat	golgi	60.56	61.71
TraesCS4A01G311400.1	Wheat	mitochondrion, plastid	60.56	61.71
TraesCS4B01G003400.1	Wheat	plastid	59.63	60.95
Solyc08g008060.1.1	Tomato	cytosol	59.63	60.95
TraesCS4A01G492800.1	Wheat	mitochondrion, plastid	21.43	60.0
TraesCS3B01G220800.1	Wheat	mitochondrion, plastid	21.12	59.13
OQU92195	Sorghum	cytosol	57.76	59.05
Zm00001d019754_P001	Maize	mitochondrion, plastid	63.66	58.07
PGSC0003DMT400014810	Potato	mitochondrion	44.1	57.96
OQU92191	Sorghum	plastid	56.21	57.83
EER91987	Sorghum	plastid	56.21	57.83
TraesCS4D01G003400.2	Wheat	mitochondrion	57.76	57.76
CDY52816	Canola	cytosol	57.14	57.5
CDX74954	Canola	cytosol	57.14	57.5
CDY18436	Canola	cytosol	57.14	57.32
Zm00001d047150_P003	Maize	plastid	55.9	57.14
TraesCS1A01G207500.1	Wheat	cytosol	55.9	57.14
Os04t0291100-01	Rice	mitochondrion	55.59	57.01
Zm00001d029840_P003	Maize	plastid	59.01	56.89
CDY52817	Canola	cytosol	56.52	56.88
TraesCS1B01G221200.1	Wheat	cytosol	55.59	56.83
CDX81232	Canola	cytosol	56.52	56.7
Os10t0547900-01	Rice	cytosol	54.66	56.05
TraesCS1D01G210800.1	Wheat	plastid	54.97	55.66
CDY68648	Canola	cytosol	36.02	55.5
Os10t0548000-02	Rice	cytosol, peroxisome, plastid	54.97	55.49
CDY10440	Canola	plastid	55.28	54.77
CDX88292	Canola	cytosol	26.4	54.14
CDY40365	Canola	mitochondrion	55.59	54.08
CDY11217	Canola	mitochondrion	54.97	53.47
Zm00001d025129_P001	Maize	mitochondrion	38.51	52.77
CDY55418	Canola	cytosol	47.83	51.51
CDY53896	Canola	plastid	29.81	48.0
CDY72311	Canola	cytosol	28.57	45.54
CDY72089	Canola	cytosol	28.26	45.27
CDY10441	Canola	cytosol, extracellular, mitochondrion, plastid	18.94	44.53
CDY10985	Canola	cytosol	44.41	43.07
CDX76323	Canola	cytosol	43.79	42.47
CDY50440	Canola	mitochondrion	44.1	41.89
CDY53433	Canola	plastid	44.1	40.8
CDX71585	Canola	mitochondrion	33.85	32.15
CDY70072	Canola	cytosol	16.46	31.74
CDX92838	Canola	cytosol	30.43	30.62
CDY19025	Canola	cytosol	33.23	28.69
CDX89228	Canola	cytosol, nucleus, peroxisome	32.92	28.42
CDX89249	Canola	plastid	32.61	26.45
CDY29311	Canola	plastid	32.61	26.45
CDY15470	Canola	plastid	32.3	26.13
CDY51384	Canola	plastid	32.3	26.13
CDY18175	Canola	plastid	31.68	25.5
CDY14325	Canola	plastid	31.99	25.5
CDY29859	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	28.88	25.41
CDX89877	Canola	plastid	31.37	25.25
CDY18309	Canola	plastid	26.71	24.64
CDX98171	Canola	plastid	26.4	24.36
CDX96191	Canola	mitochondrion	32.92	24.09
CDY64354	Canola	cytosol	16.77	23.79
CDY27027	Canola	golgi, mitochondrion, nucleus	32.61	23.44
CDY37755	Canola	mitochondrion, plastid	42.55	21.99
CDY29840	Canola	plastid	32.92	16.75
CDX92832	Canola	plastid	32.61	16.48
CDY08387	Canola	cytosol, nucleus, plastid	44.41	16.05
CDY47833	Canola	cytosol, nucleus, plastid	44.1	15.94
CDY38726	Canola	cytosol, golgi, plastid	32.3	12.5

Protein Annotations

EnsemblPlants:CDX76338	EnsemblPlantsGene:GSBRNA2T00126715001	Gene3D:3.40.50.720	GO:A0A078CMM6	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
PANTHER:PTHR24320	PANTHER:PTHR24320:SF146	PFAM:PF00106	PRINTS:PR00081	ProteinID:CDX76338	ProteinID:CDX76338.1
SEG:seg	SUPFAM:SSF51735	UniParc:UPI0002545FE7	MapMan:23.1.3.5.1	:	:

Description

BnaA08g10620D

Coordinates

chrLK031807:-:507415..509474

Molecular Weight (calculated)

34748.3 Da

IEP (calculated)

8.598

GRAVY (calculated)

-0.088

Length

322 amino acids

Sequence
(BLAST)

001: MWFWGSKGAS GFSSSSTAED VTHGVDGTGL TAIVTGASSG IGVETARVLA LRGVHVVMAV RNTVSGAKVK QDILNQVPGA KLDVMELDLS SIESVRRFAS
101: DYKSTGLPLN ILINNAGVMA CPFMLSKDNI ELQFATNHLG HFLLTKLLLD TMKNTSRESK REGRIVNLSS EAHRFSYPEG VRFDKINDVS SYSSISAYGQ
201: SKLCNVLHAN ELARQLKEDG VNITVNSLHP GAIMTSLWRH FNSYLAGAVS ALASYFIKTV PQGAATTCYL ALSPQVAGVT GEYFRNCKIT KPSSFGQDSE
301: LAKKVWDFST KLTDSHSGES HS

Best Arabidopsis Sequence Match ( AT4G23430.2 )
(BLAST)

001: MWFFGSKGAS GFSSRSTAEE VTHGVDGTGL TAIVTGASSG IGVETARVLS LRGVHVVMAV RNTDSGAKVK EDIVKQVPGA KLDVMELDLS SMQSVRKFAS
101: EYKSTGLPLN LLINNAGIMA CPFMLSKDNI ELQFATNHLG HFLLTKLLLD TMKSTSRESK REGRIVNLSS EAHRFSYPEG VRFDKINDKS SYSSMRAYGQ
201: SKLCNVLHAN ELTKQLKEDG VNITANSLHP GAIMTNLGRY FNPYLAVAVG AVAKYILKSV PQGAATTCYV ALNPQVAGVS GEYFQDSNIA KPLPLVKDTE
301: LAKKVWDFST KLTDSQSGES SS

Arabidopsis Description

TIC32Short-chain dehydrogenase TIC 32, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:A2RVM0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.