CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G23430.2	Thale cress	plastid	91.61	91.61
CDY44096	Canola	mitochondrion, plastid	98.45	87.81
CDX76338	Canola	cytosol, plastid	85.71	85.71
AT4G23420.3	Thale cress	plastid	87.27	84.38
CDY69917	Canola	endoplasmic reticulum	77.02	81.31
VIT_02s0025g03380.t01	Wine grape	cytosol	72.36	73.97
CDY13264	Canola	cytosol	69.88	70.98
PGSC0003DMT400032133	Potato	cytosol	69.25	70.79
CDX86777	Canola	cytosol	69.57	70.66
KRH41194	Soybean	cytosol, plastid	68.94	70.48
KRH59919	Soybean	cytosol, plastid	68.94	70.48
Solyc08g081200.2.1	Tomato	cytosol	68.01	69.52
GSMUA_AchrUn_...	Banana	cytosol	67.39	69.33
Solyc08g008060.1.1	Tomato	cytosol	65.22	66.67
PGSC0003DMT400014810	Potato	mitochondrion	49.38	64.9
GSMUA_Achr2P18620_001	Banana	plastid	63.66	64.87
EER96376	Sorghum	mitochondrion, plastid	63.66	64.87
Os09t0570300-01	Rice	plasma membrane	62.73	63.92
TraesCS4B01G002900.1	Wheat	golgi	61.8	62.97
TraesCS4B01G003400.1	Wheat	plastid	61.18	62.54
TraesCS4D01G002700.2	Wheat	mitochondrion, plastid	61.18	62.54
TraesCS4A01G311400.1	Wheat	mitochondrion, plastid	61.18	62.34
TraesCS4D01G003200.1	Wheat	golgi	61.18	62.34
TraesCS5B01G461100.1	Wheat	mitochondrion, plastid	21.43	60.0
TraesCS4D01G003400.2	Wheat	mitochondrion	59.63	59.63
OQU92195	Sorghum	cytosol	57.76	59.05
TraesCS4A01G492800.1	Wheat	mitochondrion, plastid	20.81	58.26
EER91987	Sorghum	plastid	56.52	58.15
Zm00001d019754_P001	Maize	mitochondrion, plastid	63.66	58.07
Zm00001d047150_P003	Maize	plastid	56.52	57.78
Os10t0547900-01	Rice	cytosol	56.21	57.64
CDY68648	Canola	cytosol	37.27	57.42
TraesCS3B01G220800.1	Wheat	mitochondrion, plastid	20.5	57.39
Os10t0548000-02	Rice	cytosol, peroxisome, plastid	56.83	57.37
OQU92191	Sorghum	plastid	55.59	57.19
TraesCS1A01G207500.1	Wheat	cytosol	55.9	57.14
TraesCS1B01G221200.1	Wheat	cytosol	55.9	57.14
Os04t0291100-01	Rice	mitochondrion	55.28	56.69
TraesCS1D01G210800.1	Wheat	plastid	55.59	56.29
Zm00001d029840_P003	Maize	plastid	58.07	55.99
CDY52816	Canola	cytosol	55.28	55.62
CDX74954	Canola	cytosol	55.28	55.62
CDY52817	Canola	cytosol	55.28	55.62
CDY18436	Canola	cytosol	54.66	54.83
Zm00001d025129_P001	Maize	mitochondrion	39.75	54.47
CDX81232	Canola	cytosol	54.04	54.21
CDY10440	Canola	plastid	54.66	54.15
CDY11217	Canola	mitochondrion	55.28	53.78
CDY40365	Canola	mitochondrion	54.97	53.47
CDY55418	Canola	cytosol	48.45	52.17
CDX88292	Canola	cytosol	24.84	50.96
CDY72311	Canola	cytosol	28.57	45.54
CDY53896	Canola	plastid	27.95	45.0
CDY72089	Canola	cytosol	27.95	44.78
CDY10985	Canola	cytosol	44.72	43.37
CDY10441	Canola	cytosol, extracellular, mitochondrion, plastid	18.32	43.07
CDX76323	Canola	cytosol	44.1	42.77
CDY50440	Canola	mitochondrion	44.41	42.18
CDY53433	Canola	plastid	43.17	39.94
CDX71585	Canola	mitochondrion	34.16	32.45
CDY70072	Canola	cytosol	15.84	30.54
CDX92838	Canola	cytosol	29.81	30.0
CDY19025	Canola	cytosol	33.23	28.69
CDX89228	Canola	cytosol, nucleus, peroxisome	32.92	28.42
CDY29311	Canola	plastid	33.85	27.46
CDX89249	Canola	plastid	33.85	27.46
CDY29859	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	29.81	26.23
CDY14325	Canola	plastid	32.3	25.74
CDY15470	Canola	plastid	31.68	25.63
CDY51384	Canola	plastid	31.68	25.63
CDX89877	Canola	plastid	31.06	25.0
CDY18175	Canola	plastid	31.06	25.0
CDY18309	Canola	plastid	26.71	24.64
CDX98171	Canola	plastid	26.4	24.36
CDY64354	Canola	cytosol	16.46	23.35
CDX96191	Canola	mitochondrion	31.68	23.18
CDY27027	Canola	golgi, mitochondrion, nucleus	31.37	22.54
CDY37755	Canola	mitochondrion, plastid	43.17	22.31
CDY29840	Canola	plastid	34.16	17.38
CDX92832	Canola	plastid	33.85	17.11
CDY08387	Canola	cytosol, nucleus, plastid	43.17	15.6
CDY47833	Canola	cytosol, nucleus, plastid	42.86	15.49
CDY38726	Canola	cytosol, golgi, plastid	31.06	12.02

Protein Annotations

EnsemblPlants:CDY10884	EnsemblPlantsGene:GSBRNA2T00048780001	Gene3D:3.40.50.720	GO:A0A078FD69	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
PANTHER:PTHR24320	PANTHER:PTHR24320:SF146	PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081	ProteinID:CDY10884
ProteinID:CDY10884.1	SEG:seg	SUPFAM:SSF51735	UniParc:UPI0004EDD8DE	UniProt:A0A078FD69	MapMan:23.1.3.5.1

Description

BnaC01g14990DBnaC01g14990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FD69]

Coordinates

chrLK032007:+:604821..607378

Molecular Weight (calculated)

34642.4 Da

IEP (calculated)

9.538

GRAVY (calculated)

-0.161

Length

322 amino acids

Sequence
(BLAST)

001: MWFFGKKGAS GFSARSTAEE VTHGVDGTGL TAIVTGASSG IGVETARVLA LRGVHVVMAV RNTGSGAKVK EDIVNRVPGA KLDVMELDLS SMDSVRKFAS
101: DYKSSGRPLN LLVNNAGIMA CPFMLSKDNI ELQFATNHLG HFLLTKLLLD TMKNTSRESK REGRIVNLSS EAHRYSYPEG VRFDKINDKS SYSSIRAYGQ
201: SKLCNILHAN ELAKQLKEDG VNITANSLHP GAIMTNLGRY FNSYLAGAVG AVAKYVLKTV PQGAATTCYV ALNPQVTGVT GEYFLDSNIA KPLSLAKDSE
301: LAKKVWDFST KLTESQSGES SS

Best Arabidopsis Sequence Match ( AT4G23430.2 )
(BLAST)

001: MWFFGSKGAS GFSSRSTAEE VTHGVDGTGL TAIVTGASSG IGVETARVLS LRGVHVVMAV RNTDSGAKVK EDIVKQVPGA KLDVMELDLS SMQSVRKFAS
101: EYKSTGLPLN LLINNAGIMA CPFMLSKDNI ELQFATNHLG HFLLTKLLLD TMKSTSRESK REGRIVNLSS EAHRFSYPEG VRFDKINDKS SYSSMRAYGQ
201: SKLCNVLHAN ELTKQLKEDG VNITANSLHP GAIMTNLGRY FNPYLAVAVG AVAKYILKSV PQGAATTCYV ALNPQVAGVS GEYFQDSNIA KPLPLVKDTE
301: LAKKVWDFST KLTDSQSGES SS

Arabidopsis Description

TIC32Short-chain dehydrogenase TIC 32, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:A2RVM0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.