CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX96624
CDY01355
CDY31868
CDY33645

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24050.1	CDX96624	AT1G20770.1	21798944
AT4G24050.1	CDY01355	AT1G20770.1	21798944
AT4G24050.1	CDY31868	AT1G20770.1	21798944
AT4G24050.1	CDY33645	AT1G20770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10985	Canola	cytosol	96.17	98.19
CDX76323	Canola	cytosol	94.69	96.69
Bra019248.1-P	Field mustard	cytosol	94.1	96.08
CDY72089	Canola	cytosol	56.34	95.02
CDY72311	Canola	cytosol	55.16	92.57
AT4G24050.1	Thale cress	cytosol	89.09	90.96
Solyc08g082870.2.1	Tomato	cytosol	73.75	74.18
PGSC0003DMT400031933	Potato	cytosol	73.16	73.59
KRH41377	Soybean	cytosol	72.86	73.29
VIT_02s0025g02190.t01	Wine grape	cytosol	71.98	72.62
CDY53896	Canola	plastid	42.48	72.0
CDY53433	Canola	plastid	71.68	69.83
GSMUA_Achr8P11870_001	Banana	cytosol	65.78	65.59
TraesCS5A01G527400.1	Wheat	mitochondrion	63.13	64.26
TraesCS4D01G351800.1	Wheat	mitochondrion	63.13	64.07
TraesCS4B01G358400.1	Wheat	mitochondrion	62.83	63.96
TraesCS4B01G358200.1	Wheat	mitochondrion, plastid	62.54	63.66
TraesCS5A01G527300.1	Wheat	mitochondrion	63.42	63.24
Os03t0115700-01	Rice	mitochondrion	61.65	62.95
GSMUA_Achr11P...	Banana	cytosol	63.72	62.61
TraesCS4B01G358500.1	Wheat	mitochondrion	63.13	62.21
HORVU4Hr1G086380.1	Barley	mitochondrion, plastid	62.83	61.56
TraesCS4D01G351700.1	Wheat	mitochondrion, plastid	62.54	60.23
Os06t0129100-01	Rice	mitochondrion	61.36	58.92
OQU93381	Sorghum	mitochondrion	61.65	58.87
TraesCS4B01G358300.1	Wheat	plastid	53.98	58.65
Zm00001d045495_P001	Maize	mitochondrion	61.36	57.62
Zm00001d027353_P001	Maize	mitochondrion	61.36	57.62
EER87765	Sorghum	mitochondrion	60.47	56.94
HORVU7Hr1G011180.12	Barley	plastid	59.88	56.55
TraesCS7A01G061000.1	Wheat	mitochondrion, plastid	58.7	56.06
TraesCS4A01G428800.1	Wheat	mitochondrion, plastid	58.7	55.43
TraesCS7D01G055800.1	Wheat	mitochondrion, plastid	59.0	55.25
CDY18436	Canola	cytosol	48.08	50.78
CDY52816	Canola	cytosol	47.49	50.31
CDX81232	Canola	cytosol	47.49	50.16
CDX74954	Canola	cytosol	47.2	50.0
CDY52817	Canola	cytosol	46.9	49.69
CDX88292	Canola	cytosol	22.71	49.04
CDY10440	Canola	plastid	46.31	48.31
CDY40365	Canola	mitochondrion	46.9	48.04
CDY11217	Canola	mitochondrion	46.02	47.13
CDY68648	Canola	cytosol	28.32	45.93
CDY55418	Canola	cytosol	40.12	45.48
CDY10441	Canola	cytosol, extracellular, mitochondrion, plastid	18.29	45.26
CDY10884	Canola	plastid	42.18	44.41
CDX86777	Canola	cytosol	41.3	44.16
CDY13264	Canola	cytosol	41.3	44.16
CDX76338	Canola	cytosol, plastid	41.89	44.1
CDY69917	Canola	endoplasmic reticulum	38.64	42.95
CDX71585	Canola	mitochondrion	39.82	39.82
CDY44096	Canola	mitochondrion, plastid	42.18	39.61
CDY70072	Canola	cytosol	14.16	28.74
CDX92838	Canola	cytosol	26.25	27.81
CDY37755	Canola	mitochondrion, plastid	49.56	26.97
CDY08387	Canola	cytosol, nucleus, plastid	70.8	26.94
CDY47833	Canola	cytosol, nucleus, plastid	70.5	26.82
CDY19025	Canola	cytosol	28.91	26.27
CDX89228	Canola	cytosol, nucleus, peroxisome	28.91	26.27
CDY29859	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	26.55	24.59
CDY18175	Canola	plastid	27.73	23.5
CDX89877	Canola	plastid	27.73	23.5
CDX89249	Canola	plastid	27.43	23.43
CDY29311	Canola	plastid	27.43	23.43
CDY15470	Canola	plastid	27.43	23.37
CDY51384	Canola	plastid	27.43	23.37
CDY64354	Canola	cytosol	15.34	22.91
CDY14325	Canola	plastid	26.84	22.52
CDY18309	Canola	plastid	22.42	21.78
CDX98171	Canola	plastid	22.12	21.49
CDY27027	Canola	golgi, mitochondrion, nucleus	27.73	20.98
CDX96191	Canola	mitochondrion	26.84	20.68
CDY29840	Canola	plastid	27.73	14.85
CDX92832	Canola	plastid	27.73	14.76
CDY38726	Canola	cytosol, golgi, plastid	28.61	11.66

Protein Annotations

EnsemblPlants:CDY50440	EnsemblPlantsGene:GSBRNA2T00096702001	Gene3D:3.40.50.720	GO:A0A078IHK1	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
PANTHER:PTHR24320	PANTHER:PTHR24320:SF114	PFAM:PF00106	PRINTS:PR00081	ProteinID:CDY50440	ProteinID:CDY50440.1
SEG:seg	SUPFAM:SSF51735	UniParc:UPI0004EE9007	UniProt:A0A078IHK1	MapMan:35.1	:

Description

BnaC07g38700DBnaC07g38700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IHK1]

Coordinates

chrLK032910:+:88127..90758

Molecular Weight (calculated)

36888.3 Da

IEP (calculated)

9.194

GRAVY (calculated)

-0.047

Length

339 amino acids

Sequence
(BLAST)

001: MRERRTVTFV PRRYLIGAAG VSGFGSKSTA DEVTENCDLR STTAIITGAT SGIGAETARV LAKRGARLIF PARNVKAAEQ AKGRIVSEFP ETEIVVMELD
101: LSSMSSVRSF VAGFESLHLP LNFLINNAGR LAHEHAISED GIEMTFATNY LGHFLLTNLL LKKMIQTAEE TGVQGRIVNV TSGIHGWFSG DLIEYLRQIS
201: QPKCQFDATR AYALSKLANV LHTKELSSRL QKIGANVTVN CVHPGVVKTR LTRDREGLLT DLVFFLTSKL LKTVPQAAAT TCYVATNPRL MNVSGKYFTD
301: CNETTPSGLG SNSSEATKLW AASEILVTQH SKTGFDPLS

Best Arabidopsis Sequence Match ( AT4G24050.1 )
(BLAST)

001: MIETGKYLLG AAGASGFGSK STAEEVTENC DLRSITAVIT GATSGIGAET ARVLAKRGAR LIFPARNVKA AEEAKERIVS EFPETEIVVM KLDLSSIASV
101: RNFVADFESL DLPLNLLINN AGKLAHEHAI SEDGIEMTFA TNYLGHFLLT NLLLNKMIQT AEETGVQGRI VNVTSGIHGW FSGDLIEYLR LISQPKCQFD
201: ATRAYALSKL ANVLHTKELS SRLQKIGANV TVNCVHPGVV RTRLTRDREG LLTDLVFFLA SKLVKTVPQA AATTCYVATN PRLVNVSGKY FTDCNETTPS
301: GLGTNSSEAT KLWAASEILV TQHSKTSFDP CS

Arabidopsis Description

AT4g24050/T19F6_40 [Source:UniProtKB/TrEMBL;Acc:O22985]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.