CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019049.1-P	Field mustard	plastid	62.56	99.5
CDX89249	Canola	plastid	59.87	95.47
CDX92832	Canola	plastid	96.05	95.45
CDY29311	Canola	plastid	59.56	94.96
AT4G27440.1	Thale cress	plastid	58.45	92.27
CDY14325	Canola	plastid	53.55	83.91
KRH27209	Soybean	nucleus, plastid	52.76	83.71
Solyc12g013710.1.1	Tomato	extracellular, nucleus, plastid	51.66	82.37
PGSC0003DMT400039734	Potato	plastid	51.5	82.12
Solyc10g006900.2.1	Tomato	plastid	51.18	82.03
PGSC0003DMT400064369	Potato	plastid	51.34	81.66
VIT_19s0014g03160.t01	Wine grape	plastid	50.71	81.06
CDX98171	Canola	plastid	44.08	79.94
CDY18309	Canola	plastid	43.92	79.66
KRH55334	Soybean	plastid	50.08	79.45
EER94008	Sorghum	plastid	48.82	78.43
TraesCS2D01G563700.1	Wheat	cytosol	29.86	78.42
Zm00001d013937_P001	Maize	plastid	48.97	78.28
Zm00001d032576_P001	Maize	plastid	48.82	78.03
VIT_12s0059g00270.t01	Wine grape	plastid	49.13	77.94
PGSC0003DMT400047264	Potato	plastid	48.66	77.39
Solyc07g054210.2.1	Tomato	plastid	48.5	76.94
KRH26074	Soybean	plastid	41.23	76.32
CDY18175	Canola	plastid	48.18	76.25
GSMUA_Achr3P14270_001	Banana	plastid	46.6	76.23
CDX89877	Canola	plastid	48.03	76.0
TraesCS1B01G186300.1	Wheat	plastid	47.39	75.95
HORVU1Hr1G044680.1	Barley	plastid	47.24	75.7
CDY15470	Canola	plastid	47.55	75.63
CDY51384	Canola	plastid	47.55	75.63
GSMUA_Achr11P...	Banana	plastid	47.24	75.51
Os10t0496900-02	Rice	plastid	47.24	74.38
TraesCS2B01G593000.1	Wheat	plastid	45.34	73.97
TraesCS2A01G590600.1	Wheat	plastid	45.34	73.97
Os04t0678700-01	Rice	plastid	45.18	73.9
TraesCS2D01G563600.1	Wheat	golgi, plastid	45.18	73.71
GSMUA_Achr7P04280_001	Banana	plastid	45.81	72.86
EES11656	Sorghum	plastid	44.23	72.73
Zm00001d001820_P001	Maize	plastid	44.08	72.09
TraesCS1A01G171000.1	Wheat	golgi, plastid	47.39	71.94
TraesCS1D01G168700.2	Wheat	plastid	47.24	71.7
HORVU4Hr1G073090.1	Barley	plastid	13.27	60.0
HORVU2Hr1G006120.3	Barley	plastid	11.53	59.84
HORVU5Hr1G104070.1	Barley	plastid	11.69	57.81
HORVU2Hr1G119050.2	Barley	mitochondrion	32.7	55.2
HORVU2Hr1G020490.1	Barley	plastid	14.06	54.94
CDY10884	Canola	plastid	17.38	34.16
CDX76338	Canola	cytosol, plastid	16.75	32.92
CDY13264	Canola	cytosol	16.43	32.81
CDX86777	Canola	cytosol	16.43	32.81
CDX74954	Canola	cytosol	16.43	32.5
CDX88292	Canola	cytosol	8.06	32.48
CDY69917	Canola	endoplasmic reticulum	15.64	32.46
CDY52817	Canola	cytosol	16.27	32.19
CDY52816	Canola	cytosol	16.27	32.19
CDX81232	Canola	cytosol	16.27	32.09
CDY18436	Canola	cytosol	16.11	31.78
CDY10440	Canola	plastid	16.11	31.38
CDY40365	Canola	mitochondrion	15.96	30.51
CDY44096	Canola	mitochondrion, plastid	17.22	30.19
CDY11217	Canola	mitochondrion	15.48	29.61
CDY53896	Canola	plastid	9.32	29.5
CDY68648	Canola	cytosol	9.64	29.19
CDY55418	Canola	cytosol	13.74	29.1
CDY72089	Canola	cytosol	9.16	28.86
CDY53433	Canola	plastid	15.8	28.74
CDY72311	Canola	cytosol	9.16	28.71
CDY10985	Canola	cytosol	15.01	28.61
CDX76323	Canola	cytosol	15.01	28.61
CDX92838	Canola	cytosol	14.06	27.81
CDY10441	Canola	cytosol, extracellular, mitochondrion, plastid	6.0	27.74
CDY50440	Canola	mitochondrion	14.85	27.73
CDX89228	Canola	cytosol, nucleus, peroxisome	14.53	24.66
CDY19025	Canola	cytosol	14.38	24.4
CDY70072	Canola	cytosol	6.32	23.95
CDY29859	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	13.59	23.5
CDY64354	Canola	cytosol	8.21	22.91
HORVU2Hr1G119090.2	Barley	plastid	15.01	22.46
CDX71585	Canola	mitochondrion	12.01	22.42
CDY27027	Canola	golgi, mitochondrion, nucleus	13.74	19.42
CDX96191	Canola	mitochondrion	13.27	19.09
CDY37755	Canola	mitochondrion, plastid	14.38	14.61
CDY47833	Canola	cytosol, nucleus, plastid	16.9	12.01
CDY08387	Canola	cytosol, nucleus, plastid	16.75	11.9
CDY38726	Canola	cytosol, golgi, plastid	14.38	10.94

Protein Annotations

KEGG:00860+1.3.1.33	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	Gene3D:3.40.50.720	MapMan:7.12.6.5.1	GO:A0A078GTL5
UniProt:A0A078GTL5	EnsemblPlants:CDY29840	ProteinID:CDY29840	ProteinID:CDY29840.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0015979
GO:GO:0015995	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0016630	GO:GO:0046872
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00044275001	InterPro:IPR001841	InterPro:IPR013083	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00097
PFAM:PF00106	PRINTS:PR00081	ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR44419	PANTHER:PTHR44419:SF3
InterPro:Prochl_reduct	InterPro:SDR_fam	SMART:SM00184	SUPFAM:SSF51735	SUPFAM:SSF57850	TIGRFAMs:TIGR01289
TMHMM:TMhelix	UniPathway:UPA00668	UniParc:UPI0004EDEE4C	InterPro:Znf_C3HC4_RING-type	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_RING_CS	SEG:seg	:	:	:	:

Description

BnaA03g48610DBnaA03g48610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GTL5]

Coordinates

chrLK032245:+:14865..18505

Molecular Weight (calculated)

68876.2 Da

IEP (calculated)

8.375

GRAVY (calculated)

-0.144

Length

633 amino acids

Sequence
(BLAST)

001: MALQVALLVS SAFSVQKDGK VNASSSSFKD SSLFGASITE HGSSSLRFKR EHSSRSVLAV RAQTAATSSP SVTKSSSGGK KTLRKGNVVV TGASSGLGLA
101: TAKALAETGK WHVIMACRDF LKAERAAKSA GMPKDSYTVM HLDLASLDSV RQFVDSFRRS EMPLDVLVCN AAVYFPTAKE PSYSAEGFEL SVATNHLGHF
201: LLSRLLLDDL KKSDYPSKRL IIVGSITGNT NTLAGNVPPK ANLGDLRGLS GGLNGLNSSA MIDGGDFDGA KAYKDSKVCN MLTMQELHRR YHEETGVTFA
301: SLYPGCIAST GLFREHIPLF RTLFPPFQKY ITKGYVSETE SGKRLAQVVS DPSLTKSGVY WSWNKASASF ENELSEEASD VEKARKVWEI SEKLVGTLPP
401: MEGSFLISDA QQAHEEVKQK PNLITGPAGS QANESGCFDC NICLDTALDP VVTLCGHLFC WPCIYKWLHV QLSSLSTDHH RHNNCPVCKS NIAITSLVPL
501: YGRGMSSSVN SKEQDSESTV IPRRPAPSTT LNNPIASEPS LNQTMSPTFH SHRYSPRGFT TTESTDLANA VMMSLLYPVI GMFGDMVYTR VFGTFTNAIA
601: QPYQSQRMMQ TDKSLNRVSI FFLCCIILCL LLF

Best Arabidopsis Sequence Match ( AT4G27440.1 )
(BLAST)

001: MALQAASLVS SAFSVRKDAK LNASSSSFKD SSLFGASITD QIKSEHGSSS LRFKREQSLR NLAIRAQTAA TSSPTVTKSV DGKKTLRKGN VVVTGASSGL
101: GLATAKALAE TGKWNVIMAC RDFLKAERAA KSVGMPKDSY TVMHLDLASL DSVRQFVDNF RRTETPLDVL VCNAAVYFPT AKEPTYSAEG FELSVATNHL
201: GHFLLARLLL DDLKKSDYPS KRLIIVGSIT GNTNTLAGNV PPKANLGDLR GLAGGLNGLN SSAMIDGGDF DGAKAYKDSK VCNMLTMQEF HRRFHEETGV
301: TFASLYPGCI ASTGLFREHI PLFRALFPPF QKYITKGYVS ETESGKRLAQ VVSDPSLTKS GVYWSWNNAS ASFENQLSEE ASDVEKARKV WEISEKLVGL
401: A

Arabidopsis Description

PORBProtochlorophyllide reductase B, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P21218]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.