Factsheet for PGSC0003DMT400047264

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006495
PGSC0003DMT400015077
PGSC0003DMT400017657
PGSC0003DMT400039734
PGSC0003DMT400047264
PGSC0003DMT400050482
PGSC0003DMT400064369
PGSC0003DMT400071510
PGSC0003DMT400073246
PGSC0003DMT400084737

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03630.1	PGSC0003DMT400039734	AT1G03630.1	21798944
AT1G03630.1	PGSC0003DMT400047264	AT1G03630.1	21798944
AT1G03630.1	PGSC0003DMT400064369	AT1G03630.1	21798944
AT1G03630.1	PGSC0003DMT400084737	AT1G27300.1	21798944
AT1G03630.1	PGSC0003DMT400006495	AT3G16310.1	21798944
AT1G03630.1	PGSC0003DMT400071510	AT4G19030.1	21798944
AT1G03630.1	PGSC0003DMT400073246	AT4G19030.1	21798944
AT1G03630.1	PGSC0003DMT400039734	AT4G27440.1	21798944
AT1G03630.1	PGSC0003DMT400047264	AT4G27440.1	21798944
AT1G03630.1	PGSC0003DMT400064369	AT4G27440.1	21798944
AT1G03630.1	PGSC0003DMT400017657	AT5G11980.1	21798944
AT1G03630.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT1G03630.1	PGSC0003DMT400050482	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g054210.2.1	Tomato	plastid	99.5	99.25
VIT_12s0059g00270.t01	Wine grape	plastid	82.91	82.71
PGSC0003DMT400064369	Potato	plastid	79.65	79.65
CDX89249	Canola	plastid	79.4	79.6
CDY29311	Canola	plastid	79.4	79.6
Bra026349.1-P	Field mustard	plastid	77.14	79.12
PGSC0003DMT400039734	Potato	plastid	78.89	79.09
Bra019049.1-P	Field mustard	plastid	77.39	77.39
CDY51384	Canola	plastid	77.14	77.14
AT4G27440.1	Thale cress	plastid	77.64	77.06
AT5G54190.1	Thale cress	plastid	78.39	77.04
GSMUA_Achr11P...	Banana	plastid	76.63	77.02
Bra030540.1-P	Field mustard	plastid	76.88	76.88
Bra003004.1-P	Field mustard	plastid	77.64	76.67
CDY15470	Canola	plastid	76.63	76.63
CDY14325	Canola	plastid	77.39	76.24
CDY18175	Canola	plastid	76.38	76.0
CDX89877	Canola	plastid	76.38	76.0
Bra033415.1-P	Field mustard	plastid	76.38	76.0
TraesCS2D01G563700.1	Wheat	cytosol	45.98	75.93
AT1G03630.1	Thale cress	plastid	76.38	75.81
CDX98171	Canola	plastid	65.33	74.5
CDY18309	Canola	plastid	65.08	74.21
Zm00001d013937_P001	Maize	plastid	73.62	73.99
Zm00001d032576_P001	Maize	plastid	73.37	73.74
GSMUA_Achr3P14270_001	Banana	plastid	71.61	73.64
EER94008	Sorghum	plastid	72.86	73.6
HORVU1Hr1G044680.1	Barley	plastid	72.86	73.42
TraesCS1B01G186300.1	Wheat	plastid	72.61	73.16
Os04t0678700-01	Rice	plastid	70.35	72.35
GSMUA_Achr7P04280_001	Banana	plastid	71.36	71.36
EES11656	Sorghum	plastid	68.84	71.17
Os10t0496900-02	Rice	plastid	71.61	70.9
TraesCS2A01G590600.1	Wheat	plastid	68.59	70.36
TraesCS2B01G593000.1	Wheat	plastid	68.59	70.36
TraesCS2D01G563600.1	Wheat	golgi, plastid	68.34	70.1
TraesCS1D01G168700.2	Wheat	plastid	73.12	69.78
TraesCS1A01G171000.1	Wheat	golgi, plastid	72.86	69.54
Zm00001d001820_P001	Maize	plastid	67.09	68.99
HORVU2Hr1G006120.3	Barley	plastid	16.08	52.46
HORVU2Hr1G119050.2	Barley	mitochondrion	49.25	52.27
HORVU4Hr1G073090.1	Barley	plastid	18.34	52.14
HORVU5Hr1G104070.1	Barley	plastid	16.33	50.78
HORVU2Hr1G020490.1	Barley	plastid	20.1	49.38
CDY29840	Canola	plastid	77.39	48.66
CDX92832	Canola	plastid	77.64	48.51
PGSC0003DMT400040845	Potato	cytosol	27.39	34.82
PGSC0003DMT400040847	Potato	cytosol	27.14	34.5
PGSC0003DMT400085601	Potato	plastid	13.82	34.16
PGSC0003DMT400032133	Potato	cytosol	26.88	33.97
PGSC0003DMT400040848	Potato	plastid	26.63	33.87
PGSC0003DMT400022813	Potato	mitochondrion	26.13	32.5
PGSC0003DMT400049292	Potato	mitochondrion	25.88	31.89
PGSC0003DMT400014810	Potato	mitochondrion	17.59	28.57
PGSC0003DMT400069439	Potato	plastid	17.34	28.28
PGSC0003DMT400046811	Potato	plastid	22.86	27.49
PGSC0003DMT400031933	Potato	cytosol	22.86	27.0
PGSC0003DMT400073742	Potato	cytosol	21.11	23.14
PGSC0003DMT400026316	Potato	cytosol	22.36	23.12
HORVU2Hr1G119090.2	Barley	plastid	22.11	20.8

Protein Annotations

KEGG:00860+1.3.1.33	EntrezGene:102599631	Gene3D:3.40.50.720	MapMan:7.12.6.5.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0015979	GO:GO:0015995
GO:GO:0016491	GO:GO:0016630	GO:GO:0055114	UniProt:M1BKE9	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106
EnsemblPlantsGene:PGSC0003DMG400018351	PGSC:PGSC0003DMG400018351	EnsemblPlants:PGSC0003DMT400047264	PRINTS:PR00081	PANTHER:PTHR44419	PANTHER:PTHR44419:SF3
InterPro:Prochl_reduct	InterPro:SDR_fam	SUPFAM:SSF51735	TIGRFAMs:TIGR01289	UniParc:UPI0002954404	RefSeq:XP_006357495.1
SEG:seg	:	:	:	:	:

Description

NADPH:protochlorophyllide oxidoreductase [Source:PGSC_GENE;Acc:PGSC0003DMG400018351]

Coordinates

chr7:+:48946514..48949583

Molecular Weight (calculated)

43084.6 Da

IEP (calculated)

9.692

GRAVY (calculated)

-0.197

Length

398 amino acids

Sequence
(BLAST)

001: MALQAASLLP SAFSLHKEGK TSSANLKDSS FFGVALSCNL KSKFTPAGNK ELTRKLAIVP IRAQTAATTP AITQSTSGQK KTLRKGNVII TGASSGLGLA
101: TAKAIGESGD WHVIMACRDF LKAEKAAKSL GIPKENYTVM HLDLASLESV RQFVDNFRRS GRPLDALVCN AAVYLPTAKE PTFTADGFEL SVGTNHLGHF
201: LLSRLLLDDL KQSDYPQKRL IIVGSITGNT NTLAGNVPPK ANLGDLRGLS GGLNSLNCSP MIDGGEFDGA KAYKDSKVCN MLTMQEFHRR FHEETGIAFA
301: SLYPGCIAET GLFRNHIPLF RTLFPPFQKY ITKGYVSEEE AGKRLAQVVR DPSLSKSGVY WSWNSASSSF ENQLSKEASD AEKARKLWEV SEKLVGLA

Best Arabidopsis Sequence Match ( AT5G54190.1 )
(BLAST)

001: MALQAASLVS SAFSVRKDGK LNASASSSFK ESSLFGVSLS EQSKADFVSS SLRCKREQSL RNNKAIIRAQ AIATSTPSVT KSSLDRKKTL RKGNVVVTGA
101: SSGLGLATAK ALAETGKWHV IMACRDFLKA ERAAQSAGMP KDSYTVMHLD LASLDSVRQF VDNFRRAEMP LDVLVCNAAV YQPTANQPTF TAEGFELSVG
201: INHLGHFLLS RLLIDDLKNS DYPSKRLIIV GSITGNTNTL AGNVPPKANL GDLRGLAGGL NGLNSSAMID GGDFVGAKAY KDSKVCNMLT MQEFHRRFHE
301: DTGITFASLY PGCIATTGLF REHIPLFRTL FPPFQKYITK GYVSESEAGK RLAQVVADPS LTKSGVYWSW NKTSASFENQ LSQEASDVEK ARRVWEVSEK
401: LVGLA

Arabidopsis Description

PORAPORA [Source:UniProtKB/TrEMBL;Acc:A0A178UR02]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.