Factsheet for PGSC0003DMT400039734

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006495
PGSC0003DMT400015077
PGSC0003DMT400017657
PGSC0003DMT400039734
PGSC0003DMT400047264
PGSC0003DMT400050482
PGSC0003DMT400064369
PGSC0003DMT400071510
PGSC0003DMT400073246
PGSC0003DMT400084737

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03630.1	PGSC0003DMT400039734	AT1G03630.1	21798944
AT1G03630.1	PGSC0003DMT400047264	AT1G03630.1	21798944
AT1G03630.1	PGSC0003DMT400064369	AT1G03630.1	21798944
AT1G03630.1	PGSC0003DMT400084737	AT1G27300.1	21798944
AT1G03630.1	PGSC0003DMT400006495	AT3G16310.1	21798944
AT1G03630.1	PGSC0003DMT400071510	AT4G19030.1	21798944
AT1G03630.1	PGSC0003DMT400073246	AT4G19030.1	21798944
AT1G03630.1	PGSC0003DMT400039734	AT4G27440.1	21798944
AT1G03630.1	PGSC0003DMT400047264	AT4G27440.1	21798944
AT1G03630.1	PGSC0003DMT400064369	AT4G27440.1	21798944
AT1G03630.1	PGSC0003DMT400017657	AT5G11980.1	21798944
AT1G03630.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT1G03630.1	PGSC0003DMT400050482	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g013710.1.1	Tomato	extracellular, nucleus, plastid	98.99	98.99
PGSC0003DMT400064369	Potato	plastid	89.67	89.45
VIT_19s0014g03160.t01	Wine grape	plastid	84.63	84.85
Bra026349.1-P	Field mustard	plastid	81.86	83.76
CDX89249	Canola	plastid	83.63	83.63
CDY29311	Canola	plastid	83.63	83.63
KRH27209	Soybean	nucleus, plastid	82.87	82.46
Bra019049.1-P	Field mustard	plastid	82.12	81.91
AT4G27440.1	Thale cress	plastid	82.62	81.8
KRH55334	Soybean	plastid	82.12	81.7
Bra003004.1-P	Field mustard	plastid	82.87	81.64
CDY14325	Canola	plastid	82.87	81.44
TraesCS2D01G563700.1	Wheat	cytosol	48.87	80.5
AT5G54190.1	Thale cress	plastid	81.61	80.0
CDY51384	Canola	plastid	79.6	79.4
CDY15470	Canola	plastid	79.35	79.15
PGSC0003DMT400047264	Potato	plastid	79.09	78.89
Bra030540.1-P	Field mustard	plastid	79.09	78.89
AT1G03630.1	Thale cress	plastid	79.35	78.55
CDY18175	Canola	plastid	78.84	78.25
Bra033415.1-P	Field mustard	plastid	78.84	78.25
CDX98171	Canola	plastid	68.77	78.22
CDX89877	Canola	plastid	78.59	78.0
CDY18309	Canola	plastid	68.51	77.94
KRH26074	Soybean	plastid	67.0	77.78
GSMUA_Achr3P14270_001	Banana	plastid	75.82	77.78
EER94008	Sorghum	plastid	76.57	77.16
GSMUA_Achr11P...	Banana	plastid	76.83	77.02
Zm00001d013937_P001	Maize	plastid	76.83	77.02
HORVU1Hr1G044680.1	Barley	plastid	76.32	76.71
TraesCS1B01G186300.1	Wheat	plastid	76.32	76.71
Zm00001d032576_P001	Maize	plastid	75.82	76.01
Os04t0678700-01	Rice	plastid	74.06	75.97
EES11656	Sorghum	plastid	73.3	75.58
GSMUA_Achr7P04280_001	Banana	plastid	75.57	75.38
Os10t0496900-02	Rice	plastid	76.32	75.37
TraesCS2D01G563600.1	Wheat	golgi, plastid	73.55	75.26
TraesCS2B01G593000.1	Wheat	plastid	73.05	74.74
TraesCS2A01G590600.1	Wheat	plastid	73.05	74.74
Zm00001d001820_P001	Maize	plastid	72.54	74.42
TraesCS1D01G168700.2	Wheat	plastid	76.07	72.42
TraesCS1A01G171000.1	Wheat	golgi, plastid	76.07	72.42
HORVU4Hr1G073090.1	Barley	plastid	20.4	57.86
HORVU5Hr1G104070.1	Barley	plastid	18.14	56.25
HORVU2Hr1G006120.3	Barley	plastid	17.13	55.74
HORVU2Hr1G020490.1	Barley	plastid	22.67	55.56
HORVU2Hr1G119050.2	Barley	mitochondrion	51.89	54.93
CDY29840	Canola	plastid	82.12	51.5
CDX92832	Canola	plastid	82.37	51.33
PGSC0003DMT400040845	Potato	cytosol	27.2	34.5
PGSC0003DMT400040847	Potato	cytosol	26.7	33.87
PGSC0003DMT400085601	Potato	plastid	13.6	33.54
PGSC0003DMT400032133	Potato	cytosol	26.45	33.33
PGSC0003DMT400040848	Potato	plastid	25.94	32.91
PGSC0003DMT400049292	Potato	mitochondrion	26.2	32.2
PGSC0003DMT400022813	Potato	mitochondrion	24.43	30.31
PGSC0003DMT400014810	Potato	mitochondrion	17.88	28.98
PGSC0003DMT400069439	Potato	plastid	16.37	26.64
PGSC0003DMT400046811	Potato	plastid	21.66	25.98
PGSC0003DMT400031933	Potato	cytosol	21.91	25.82
PGSC0003DMT400026316	Potato	cytosol	23.17	23.9
HORVU2Hr1G119090.2	Barley	plastid	23.68	22.22
PGSC0003DMT400073742	Potato	cytosol	20.15	22.04

Protein Annotations

KEGG:00860+1.3.1.33	EntrezGene:102588946	Gene3D:3.40.50.720	MapMan:7.12.6.5.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0015979	GO:GO:0015995
GO:GO:0016491	GO:GO:0016630	GO:GO:0055114	UniProt:M1B8N6	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106
EnsemblPlantsGene:PGSC0003DMG400015356	PGSC:PGSC0003DMG400015356	EnsemblPlants:PGSC0003DMT400039734	PRINTS:PR00081	PANTHER:PTHR44419	PANTHER:PTHR44419:SF3
InterPro:Prochl_reduct	InterPro:SDR_fam	SUPFAM:SSF51735	TIGRFAMs:TIGR01289	UniParc:UPI00029624F7	RefSeq:XP_006358983.1
SEG:seg	:	:	:	:	:

Description

NADPH:protochlorophyllide oxidoreductase [Source:PGSC_GENE;Acc:PGSC0003DMG400015356]

Coordinates

chr12:+:642591..645676

Molecular Weight (calculated)

42869.4 Da

IEP (calculated)

9.597

GRAVY (calculated)

-0.161

Length

397 amino acids

Sequence
(BLAST)

001: MALQAAALLP STFSIPKEGK TSATLKDSSL FGISLSDHVK SDFGSSFKIK SGRKSSLGAI RAETMVASPG VTNTPVTGKK TLRKGCVVIT GASSGLGLAT
101: AKALAETGKW HVIMACRDFL KAERAAKSAG MPKENYTIMH LDLASLDSVR QFVDNFRRSG NPLDVLVCNA AVYQPTAKEP SFTAEGFELS VGTNHLGHFL
201: LSRLLLDDLK QSDYPSKRLI IVGSITGNTN TLAGNVPPKA NLGDLRGLAR GLDGLNSSAM IDGGDFDGAK AYKDSKVCNM LTMQEFHRRY HEETGITFAS
301: LYPGCIATTG LFREHIPLFR LLFPPFQKFI TKGFVSEAES GKRLAQVVSD PSLTKSGVYW SWNKNSSSFE NQLSEEASDV EKARKVWEVS EKLLGLA

Best Arabidopsis Sequence Match ( AT5G54190.1 )
(BLAST)

001: MALQAASLVS SAFSVRKDGK LNASASSSFK ESSLFGVSLS EQSKADFVSS SLRCKREQSL RNNKAIIRAQ AIATSTPSVT KSSLDRKKTL RKGNVVVTGA
101: SSGLGLATAK ALAETGKWHV IMACRDFLKA ERAAQSAGMP KDSYTVMHLD LASLDSVRQF VDNFRRAEMP LDVLVCNAAV YQPTANQPTF TAEGFELSVG
201: INHLGHFLLS RLLIDDLKNS DYPSKRLIIV GSITGNTNTL AGNVPPKANL GDLRGLAGGL NGLNSSAMID GGDFVGAKAY KDSKVCNMLT MQEFHRRFHE
301: DTGITFASLY PGCIATTGLF REHIPLFRTL FPPFQKYITK GYVSESEAGK RLAQVVADPS LTKSGVYWSW NKTSASFENQ LSQEASDVEK ARRVWEVSEK
401: LVGLA

Arabidopsis Description

PORAPORA [Source:UniProtKB/TrEMBL;Acc:A0A178UR02]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.