CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 21417358

msms PMID: 21417358 doi

DR Demartini, R Jain, G Agrawal, JJ Thelen

Department of Biochemistry and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67837
CDX70438
CDX70995
CDX71796
CDX78461
CDX78905
CDX84933
CDX88803
CDX89063
CDX89877
CDX91181
CDX92368
CDX92832
CDX97739
CDX98596
CDX99411
CDY01565
CDY03907
CDY09128
CDY15470
CDY15722
CDY18175
CDY27605
CDY29840
CDY30157
CDY35676
CDY41153
CDY48365
CDY51384
CDY67814

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03630.1	CDX89877	AT1G03630.1	21798944
AT1G03630.1	CDY15470	AT1G03630.1	21798944
AT1G03630.1	CDY18175	AT1G03630.1	21798944
AT1G03630.1	CDY51384	AT1G03630.1	21798944
AT1G03630.1	CDX84933	AT1G27300.1	21798944
AT1G03630.1	CDY03907	AT1G27300.1	21798944
AT1G03630.1	CDY15722	AT1G27300.1	21798944
AT1G03630.1	CDY27605	AT1G27300.1	21798944
AT1G03630.1	CDX97739	AT3G16310.1	21798944
AT1G03630.1	CDY30157	AT3G16310.1	21798944
AT1G03630.1	CDX67837	AT3G60600.1	21798944
AT1G03630.1	CDX71796	AT3G60600.1	21798944
AT1G03630.1	CDX89063	AT3G60600.1	21798944
AT1G03630.1	CDY41153	AT3G60600.1	21798944
AT1G03630.1	CDY48365	AT3G60600.1	21798944
AT1G03630.1	CDX78905	AT4G19030.1	21798944
AT1G03630.1	CDX98596	AT4G19030.1	21798944
AT1G03630.1	CDX99411	AT4G19030.1	21798944
AT1G03630.1	CDY01565	AT4G19030.1	21798944
AT1G03630.1	CDX92832	AT4G27440.1	21798944
AT1G03630.1	CDY29840	AT4G27440.1	21798944
AT1G03630.1	CDX70438	AT5G11980.1	21798944
AT1G03630.1	CDX78461	AT5G11980.1	21798944
AT1G03630.1	CDX91181	AT5G11980.1	21798944
AT1G03630.1	CDY67814	AT5G11980.1	21798944
AT1G03630.1	CDX70995	AT5G22290.1	21798944
AT1G03630.1	CDX88803	AT5G22290.1	21798944
AT1G03630.1	CDX92368	AT5G22290.1	21798944
AT1G03630.1	CDY09128	AT5G22290.1	21798944
AT1G03630.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89877	Canola	plastid	97.5	97.5
CDY15470	Canola	plastid	94.0	94.47
AT1G03630.1	Thale cress	plastid	94.5	94.26
CDY51384	Canola	plastid	93.25	93.72
VIT_12s0059g00270.t01	Wine grape	plastid	80.0	80.2
VIT_19s0014g03160.t01	Wine grape	plastid	78.5	79.29
Solyc10g006900.2.1	Tomato	plastid	78.25	79.24
PGSC0003DMT400064369	Potato	plastid	78.75	79.15
Solyc12g013710.1.1	Tomato	extracellular, nucleus, plastid	78.5	79.09
PGSC0003DMT400039734	Potato	plastid	78.25	78.84
CDX89249	Canola	plastid	76.75	77.33
KRH27209	Soybean	nucleus, plastid	77.0	77.19
CDY29311	Canola	plastid	76.5	77.08
Zm00001d013937_P001	Maize	plastid	76.25	77.02
EER94008	Sorghum	plastid	75.5	76.65
KRH55334	Soybean	plastid	76.25	76.44
PGSC0003DMT400047264	Potato	plastid	76.0	76.38
Solyc07g054210.2.1	Tomato	plastid	76.0	76.19
Zm00001d032576_P001	Maize	plastid	75.25	76.01
TraesCS2D01G563700.1	Wheat	cytosol	45.75	75.93
CDY14325	Canola	plastid	76.5	75.74
Os10t0496900-02	Rice	plastid	75.75	75.37
HORVU1Hr1G044680.1	Barley	plastid	73.75	74.68
GSMUA_Achr3P14270_001	Banana	plastid	72.25	74.68
CDX98171	Canola	plastid	65.0	74.5
GSMUA_Achr11P...	Banana	plastid	73.5	74.24
CDY18309	Canola	plastid	64.75	74.21
TraesCS1B01G186300.1	Wheat	plastid	73.25	74.18
KRH26074	Soybean	plastid	63.25	73.98
EES11656	Sorghum	plastid	69.25	71.95
Zm00001d001820_P001	Maize	plastid	69.5	71.83
TraesCS2A01G590600.1	Wheat	plastid	69.5	71.65
GSMUA_Achr7P04280_001	Banana	plastid	71.25	71.61
Os04t0678700-01	Rice	plastid	69.25	71.58
TraesCS2D01G563600.1	Wheat	golgi, plastid	69.25	71.39
TraesCS2B01G593000.1	Wheat	plastid	69.25	71.39
TraesCS1A01G171000.1	Wheat	golgi, plastid	74.0	70.98
TraesCS1D01G168700.2	Wheat	plastid	73.5	70.5
HORVU4Hr1G073090.1	Barley	plastid	19.25	55.0
HORVU2Hr1G006120.3	Barley	plastid	16.5	54.1
HORVU2Hr1G119050.2	Barley	mitochondrion	50.5	53.87
HORVU5Hr1G104070.1	Barley	plastid	16.75	52.34
HORVU2Hr1G020490.1	Barley	plastid	20.75	51.23
CDX92832	Canola	plastid	77.0	48.35
CDY29840	Canola	plastid	76.25	48.18
CDY13264	Canola	cytosol	25.75	32.49
CDX86777	Canola	cytosol	25.75	32.49
CDX74954	Canola	cytosol	25.75	32.19
CDY18436	Canola	cytosol	25.75	32.09
CDY52816	Canola	cytosol	25.5	31.88
CDY52817	Canola	cytosol	25.5	31.88
CDY69917	Canola	endoplasmic reticulum	24.25	31.8
CDY10440	Canola	plastid	25.75	31.69
CDX76338	Canola	cytosol, plastid	25.5	31.68
CDX81232	Canola	cytosol	25.25	31.46
CDY10884	Canola	plastid	25.0	31.06
CDY40365	Canola	mitochondrion	25.5	30.82
CDX88292	Canola	cytosol	11.75	29.94
CDY55418	Canola	cytosol	22.25	29.77
CDY11217	Canola	mitochondrion	24.5	29.61
CDY68648	Canola	cytosol	15.0	28.71
CDY10985	Canola	cytosol	23.75	28.61
CDX76323	Canola	cytosol	23.75	28.61
CDY53896	Canola	plastid	14.25	28.5
CDY10441	Canola	cytosol, extracellular, mitochondrion, plastid	9.75	28.47
CDY72089	Canola	cytosol	14.25	28.36
CDY72311	Canola	cytosol	14.25	28.22
CDY53433	Canola	plastid	24.5	28.16
CDY50440	Canola	mitochondrion	23.5	27.73
CDY44096	Canola	mitochondrion, plastid	24.75	27.42
CDX92838	Canola	cytosol	21.75	27.19
CDY70072	Canola	cytosol	10.5	25.15
CDX89228	Canola	cytosol, nucleus, peroxisome	23.0	24.66
CDY19025	Canola	cytosol	22.75	24.4
CDY29859	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	20.75	22.68
CDX71585	Canola	mitochondrion	18.25	21.53
CDY64354	Canola	cytosol	11.75	20.7
HORVU2Hr1G119090.2	Barley	plastid	21.5	20.33
CDY27027	Canola	golgi, mitochondrion, nucleus	21.5	19.2
CDX96191	Canola	mitochondrion	21.0	19.09
CDY37755	Canola	mitochondrion, plastid	22.5	14.45
CDY47833	Canola	cytosol, nucleus, plastid	24.75	11.11
CDY08387	Canola	cytosol, nucleus, plastid	24.5	11.0
CDY38726	Canola	cytosol, golgi, plastid	22.0	10.58

Protein Annotations

KEGG:00860+1.3.1.33	Gene3D:3.40.50.720	MapMan:7.12.6.5.1	GO:A0A078FUP6	UniProt:A0A078FUP6	EnsemblPlants:CDY18175
ProteinID:CDY18175	ProteinID:CDY18175.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0015979	GO:GO:0015995	GO:GO:0016491	GO:GO:0016630
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00002701001	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	PRINTS:PR00081	PANTHER:PTHR44419
PANTHER:PTHR44419:SF3	InterPro:Prochl_reduct	InterPro:SDR_fam	SUPFAM:SSF51735	TIGRFAMs:TIGR01289	UniPathway:UPA00668
UniParc:UPI0004EE5C02	SEG:seg	:	:	:	:

Description

BnaC05g01980DBnaC05g01980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FUP6]

Coordinates

chrLK032083:+:163381..165332

Molecular Weight (calculated)

43703.1 Da

IEP (calculated)

9.582

GRAVY (calculated)

-0.321

Length

400 amino acids

Sequence
(BLAST)

001: MALQAAYSLL PSTVSIRKEG KFSASLKETT LTGVSFSNHL KADKISTLLT FKEQRRQSPR FSTVTRAQTV ATPPANEASP EQKKTQRKGT AVITGASSGL
101: GLATAKALAE TGEWHVVMAC RNFLKAEKAA KSVGMSKEDY TVMHLDLASL ESVKQFVDSF RRTERPLDVL VCNAAVYQPT AKEPSFTAEG FEISVGTNHL
201: GHFLLSRLLL DDLKKSDYPS KRMIIVGSIT GNTNTLAGNV PPKANLGDLR GLASGLNGQN SSMIDGGEYD GAKAYKDSKV CNMLTMQELH RRYHEETGVT
301: FASLYPGCIA TTGLFREHVP LFRLLFPPFQ KYIIKGYVSE EEAGKRLAQV VSDPSLGKSG VYWSWNNNSS SFENQLSKEA SDAEKAKKLW EVSEKLVGLA

Best Arabidopsis Sequence Match ( AT1G03630.1 )
(BLAST)

001: MALQAAYSLL PSTISIQKEG KFNASLKETT FTGSSFSNHL RAEKISTLLT IKEQRRQKPR FSTGIRAQTV TATPPANEAS PEQKKTERKG TAVITGASSG
101: LGLATAKALA DTGKWHVIMA CRNFLKAEKA ARSVGMSKED YTVMHLDLAS LESVKQFVEN FRRTEQPLDV LVCNAAVYQP TAKEPSFTAE GFEISVGTNH
201: LGHFLLSRLL LDDLKKSDYP SKRMIIVGSI TGNTNTLAGN VPPKANLGDL RGLASGLNGQ NSSMIDGGEF DGAKAYKDSK VCNMLTMQEL HRRYHEETGV
301: TFASLYPGCI ATTGLFREHI PLFRLLFPPF QKYITKGYVS EEEAGKRLAQ VVSDPSLGKS GVYWSWNNNS SSFENQLSKE ASDAEKAKKL WEVSEKLVGL
401: A

Arabidopsis Description

PORCProtochlorophyllide reductase C, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O48741]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.