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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 11
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:plastid
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
 plastid: 22908117
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g087650.2.1
Solyc02g071920.2.1
Solyc03g005980.2.1
Solyc03g120880.2.1
Solyc05g015640.2.1
Solyc06g074170.2.1
Solyc07g054210.2.1
Solyc10g006900.2.1
Solyc11g068750.1.1
Solyc12g013710.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G03630.1 Solyc07g054210.2.1 AT1G03630.1 21798944
AT1G03630.1 Solyc10g006900.2.1 AT1G03630.1 21798944
AT1G03630.1 Solyc12g013710.1.1 AT1G03630.1 21798944
AT1G03630.1 Solyc05g015640.2.1 AT1G27300.1 21798944
AT1G03630.1 Solyc03g120880.2.1 AT3G16310.1 21798944
AT1G03630.1 Solyc02g071920.2.1 AT4G19030.1 21798944
AT1G03630.1 Solyc03g005980.2.1 AT4G19030.1 21798944
AT1G03630.1 Solyc07g054210.2.1 AT4G27440.1 21798944
AT1G03630.1 Solyc10g006900.2.1 AT4G27440.1 21798944
AT1G03630.1 Solyc12g013710.1.1 AT4G27440.1 21798944
AT1G03630.1 Solyc01g087650.2.1 AT5G11980.1 21798944
AT1G03630.1 Solyc06g074170.2.1 AT5G22290.1 21798944
AT1G03630.1 Solyc11g068750.1.1 AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400064369 Potato plastid 97.47 96.73
Solyc12g013710.1.1 Tomato extracellular, nucleus, plastid 88.61 88.16
CDX89249 Canola plastid 83.04 82.62
CDY29311 Canola plastid 83.04 82.62
VIT_19s0014g03160.t01 Wine grape plastid 82.78 82.58
Bra026349.1-P Field mustard plastid 81.01 82.47
Bra019049.1-P Field mustard plastid 82.03 81.41
AT4G27440.1 Thale cress plastid 82.28 81.05
KRH27209 Soybean nucleus, plastid 81.77 80.95
KRH55334 Soybean plastid 81.77 80.95
TraesCS2D01G563700.1 Wheat cytosol 48.86 80.08
CDY14325 Canola plastid 81.77 79.95
Bra003004.1-P Field mustard plastid 81.52 79.9
AT5G54190.1 Thale cress plastid 81.27 79.26
CDY51384 Canola plastid 79.75 79.15
CDY15470 Canola plastid 79.49 78.89
Bra033415.1-P Field mustard plastid 79.75 78.75
Bra030540.1-P Field mustard plastid 79.24 78.64
CDX89877 Canola plastid 79.49 78.5
Solyc07g054210.2.1 Tomato plastid 79.24 78.45
CDY18175 Canola plastid 79.24 78.25
CDX98171 Canola plastid 68.86 77.94
AT1G03630.1 Thale cress plastid 78.99 77.81
GSMUA_Achr11P... Banana plastid 77.97 77.78
GSMUA_Achr3P14270_001 Banana plastid 76.2 77.78
CDY18309 Canola plastid 68.61 77.65
KRH26074 Soybean plastid 67.09 77.49
EER94008 Sorghum plastid 77.22 77.41
Zm00001d032576_P001 Maize plastid 77.22 77.02
Zm00001d013937_P001 Maize plastid 76.96 76.77
TraesCS1B01G186300.1 Wheat plastid 76.71 76.71
HORVU1Hr1G044680.1 Barley plastid 76.46 76.46
Os04t0678700-01 Rice plastid 73.42 74.94
TraesCS2D01G563600.1 Wheat golgi, plastid 73.42 74.74
Os10t0496900-02 Rice plastid 75.95 74.63
EES11656 Sorghum plastid 72.66 74.55
TraesCS2A01G590600.1 Wheat plastid 73.16 74.48
GSMUA_Achr7P04280_001 Banana plastid 74.94 74.37
TraesCS2B01G593000.1 Wheat plastid 72.66 73.97
Zm00001d001820_P001 Maize plastid 71.9 73.39
TraesCS1D01G168700.2 Wheat plastid 76.46 72.42
TraesCS1A01G171000.1 Wheat golgi, plastid 75.95 71.94
HORVU4Hr1G073090.1 Barley plastid 20.0 56.43
HORVU2Hr1G006120.3 Barley plastid 17.22 55.74
HORVU5Hr1G104070.1 Barley plastid 17.97 55.47
HORVU2Hr1G119050.2 Barley mitochondrion 52.15 54.93
HORVU2Hr1G020490.1 Barley plastid 22.28 54.32
CDY29840 Canola plastid 82.03 51.18
CDX92832 Canola plastid 82.53 51.18
Solyc03g025400.2.1 Tomato cytosol 27.59 34.49
Solyc03g025410.2.1 Tomato nucleus 26.84 33.87
Solyc03g025390.2.1 Tomato cytosol 26.58 33.55
Solyc08g081200.2.1 Tomato cytosol 26.58 33.33
Solyc03g025370.2.1 Tomato cytosol, nucleus, plastid 26.08 32.91
Solyc10g086390.1.1 Tomato mitochondrion 25.82 31.58
Solyc09g010510.2.1 Tomato cytosol, mitochondrion, plastid 25.57 31.56
Solyc08g008060.1.1 Tomato cytosol 24.81 31.11
Solyc08g082870.2.1 Tomato cytosol 23.29 27.3
Solyc03g098460.2.1 Tomato cytosol 23.54 24.16
Solyc03g112540.2.1 Tomato endoplasmic reticulum 21.27 23.33
Solyc12g042640.1.1 Tomato cytosol 20.51 22.31
HORVU2Hr1G119090.2 Barley plastid 23.54 21.99
Solyc06g071610.1.1 Tomato plastid 20.0 21.58
Protein Annotations
KEGG:00860+1.3.1.33Gene3D:3.40.50.720MapMan:7.12.6.5.1GO:GO:0003674GO:GO:0003824GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009507GO:GO:0009536GO:GO:0009987GO:GO:0015979GO:GO:0015995GO:GO:0016491
GO:GO:0016630GO:GO:0055114UniProt:K4CXM0InterPro:NAD(P)-bd_dom_sfPFAM:PF00106PRINTS:PR00081
PANTHER:PTHR44419PANTHER:PTHR44419:SF3InterPro:Prochl_reductInterPro:SDR_famSUPFAM:SSF51735EnsemblPlantsGene:Solyc10g006900.2
EnsemblPlants:Solyc10g006900.2.1TIGRFAMs:TIGR01289UniParc:UPI000276AFB6SEG:seg::
Description
No Description!
Coordinates
chr10:+:1335152..1338824
Molecular Weight (calculated)
42613.8 Da
IEP (calculated)
9.904
GRAVY (calculated)
-0.238
Length
395 amino acids
Sequence
(BLAST)
001: MALQASSLLP STFSKGKASA TLKNSSIFGA SLSDYTKSDF GSSSFRVKNQ RRSSNGGVVR ATMVASPGVT TNSPSGKKTL RKGCVIVTGA SSGLGLATAK
101: ALSETGKWHV IMACRDFLKA EKAAKSVGMS KENYTIMHLD LASLDSVRQF VDNFRRSGRP LDVLVANAAV YQPTAKEPSF TAEGFELSVG TNHLGHFLLS
201: RLLLDDLKQS DYPSKRLIIV GSITGNTNTL AGNVPPKANL GDLRGMAGGL NGINSSAMID GGEFDGAKAY KDSKVCNMLT MQEFHRRYHE ETGITFASLY
301: PGCIATTGLF REHIPLFRLL FPPFQKYITK GYVSETESGK RLAQVVSDPS LTKSGVYWSW NKDSASFENQ LSEEASDAEK ARKVWEVSEK LVGLA
Best Arabidopsis Sequence Match ( AT5G54190.1 )
(BLAST)
001: MALQAASLVS SAFSVRKDGK LNASASSSFK ESSLFGVSLS EQSKADFVSS SLRCKREQSL RNNKAIIRAQ AIATSTPSVT KSSLDRKKTL RKGNVVVTGA
101: SSGLGLATAK ALAETGKWHV IMACRDFLKA ERAAQSAGMP KDSYTVMHLD LASLDSVRQF VDNFRRAEMP LDVLVCNAAV YQPTANQPTF TAEGFELSVG
201: INHLGHFLLS RLLIDDLKNS DYPSKRLIIV GSITGNTNTL AGNVPPKANL GDLRGLAGGL NGLNSSAMID GGDFVGAKAY KDSKVCNMLT MQEFHRRFHE
301: DTGITFASLY PGCIATTGLF REHIPLFRTL FPPFQKYITK GYVSESEAGK RLAQVVADPS LTKSGVYWSW NKTSASFENQ LSQEASDVEK ARRVWEVSEK
401: LVGLA
Arabidopsis Description
PORAPORA [Source:UniProtKB/TrEMBL;Acc:A0A178UR02]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.