Factsheet for Solyc06g071610.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc08g006070.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50130.1	Solyc08g006070.2.1	AT5G39730.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069439	Potato	plastid	61.48	92.21
Solyc03g112540.2.1	Tomato	endoplasmic reticulum	75.14	76.39
VIT_17s0000g08920.t01	Wine grape	cytosol	68.31	75.76
KRH54355	Soybean	cytosol	63.11	70.0
KRH03249	Soybean	mitochondrion, plastid	62.3	67.66
KRH57109	Soybean	mitochondrion	62.02	67.36
KRH63592	Soybean	plastid	63.66	65.45
AT5G50130.1	Thale cress	mitochondrion	60.38	65.19
GSMUA_Achr1P25440_001	Banana	cytosol	54.37	64.61
CDX71585	Canola	mitochondrion	47.27	51.03
Solyc08g082870.2.1	Tomato	cytosol	45.36	49.26
Solyc10g086390.1.1	Tomato	mitochondrion	40.98	46.44
Solyc09g010510.2.1	Tomato	cytosol, mitochondrion, plastid	39.62	45.31
Solyc03g025410.2.1	Tomato	nucleus	38.25	44.73
Solyc03g025370.2.1	Tomato	cytosol, nucleus, plastid	37.98	44.41
Solyc03g025390.2.1	Tomato	cytosol	36.61	42.81
Solyc03g025400.2.1	Tomato	cytosol	36.89	42.72
Bra037939.1-P	Field mustard	cytosol	57.38	42.25
Solyc08g081200.2.1	Tomato	cytosol	36.34	42.22
Solyc08g008060.1.1	Tomato	cytosol	36.07	41.9
CDY37755	Canola	mitochondrion, plastid	57.38	33.71
Solyc12g042640.1.1	Tomato	cytosol	23.22	23.42
Solyc03g098460.2.1	Tomato	cytosol	24.59	23.38
Solyc07g054210.2.1	Tomato	plastid	24.32	22.31
Solyc12g013710.1.1	Tomato	extracellular, nucleus, plastid	22.13	20.4
Solyc10g006900.2.1	Tomato	plastid	21.58	20.0

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0055114	UniProt:K4C8N3
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081	PANTHER:PTHR24320	PANTHER:PTHR24320:SF120
InterPro:SDR_fam	SUPFAM:SSF51735	EnsemblPlantsGene:Solyc06g071610.1	EnsemblPlants:Solyc06g071610.1.1	TMHMM:TMhelix	UniParc:UPI00027672C5
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:-:44099492..44102586

Molecular Weight (calculated)

40867.4 Da

IEP (calculated)

10.130

GRAVY (calculated)

-0.137

Length

366 amino acids

Sequence
(BLAST)

001: MKATLKYLAG IAGSSGYGSK TTAEQVTQVC SVSFSSQLTA IITGATSGIG AETARILAKR GVRLVIPARD LKKAAILKEA IKKQSPWADI ILLEIDLSSF
101: ASIQRFCAQF LSLGLPLHIL INNAGKFSQK LEFSEDKFEL SFATNYLEML LDKMVETAEQ TGIEGRIVNV SSVVHNWVKR DKFCFSQMLN PKKYNGTRAY
201: AQSKLANILH AKELSRQLKA RNAHVAINAV HPGIVKTGIT RDHKGFITGM HFSFVSFSFF LAFHLNFAAE RSKDNEKKLT FPHKIYTDSL YFMASKLLKS
301: TSQGAASTCY VALNPQTRGI NGKYFADCNE CHCSALANDE IEAHKLWKHT RALIHRRFFQ ERERDL

Best Arabidopsis Sequence Match ( AT5G50130.1 )
(BLAST)

001: MKGTLRYLAG IAGPNGFGSR STAEQVTQHS FFPCSHLTAI ITGGTSGIGA ETARVLAKRG VRVVMAVRDM KKAEMVKERI IRENPEADII LFEIDLSSLS
101: SVARFCSQFL SQDLPLNILI NNAGVFSPNL EFSEEKIELT FATNFLGHYL LTEMLIEKMI DTAEKSGIEG RIINLSSVIH NWVKPDCFSF PKLLHPISRY
201: NGTRAYAQSK LATILHAKAL SKQLKDRNAN VTINAVHPGI VKTGIIRAHK GLFTDSLFLI ASKLLKSISQ GAATTCYVAL SNETKGLSGK YFADCNETNC
301: SDLANDEYVA LKLCTQSRAL IHDHLHEFQI HALPNLCFL

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8RWK2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.