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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 3
  • mitochondrion 3
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:cytosol
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:mitochondrion
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400014810 Potato mitochondrion 71.43 91.84
VIT_02s0025g03380.t01 Wine grape cytosol 71.11 71.11
Solyc03g025410.2.1 Tomato nucleus 68.57 69.01
Solyc08g081200.2.1 Tomato cytosol 68.57 68.57
KRH59919 Soybean cytosol, plastid 67.62 67.62
Solyc03g025390.2.1 Tomato cytosol 66.98 67.41
KRH41194 Soybean cytosol, plastid 66.98 66.98
AT4G11410.1 Thale cress cytosol, mitochondrion 66.35 65.93
CDY10884 Canola plastid 66.67 65.22
GSMUA_AchrUn_... Banana cytosol 64.13 64.54
Bra013690.1-P Field mustard plastid 66.35 64.51
CDX86777 Canola cytosol 64.76 64.35
Bra035220.1-P Field mustard cytosol 64.76 64.35
AT4G23430.2 Thale cress plastid 65.71 64.29
Solyc03g025400.2.1 Tomato cytosol 64.44 64.24
CDY13264 Canola cytosol 64.44 64.04
Solyc03g025370.2.1 Tomato cytosol, nucleus, plastid 63.49 63.9
AT4G23420.3 Thale cress plastid 65.4 61.86
EER91987 Sorghum plastid 60.32 60.7
GSMUA_Achr2P18620_001 Banana plastid 60.32 60.13
Zm00001d047150_P003 Maize plastid 59.68 59.68
Bra020819.1-P Field mustard cytosol, plastid 60.95 59.63
CDX76338 Canola cytosol, plastid 60.95 59.63
OQU92195 Sorghum cytosol 59.37 59.37
EER96376 Sorghum mitochondrion, plastid 59.37 59.18
TraesCS4D01G003200.1 Wheat golgi 59.05 58.86
Os09t0570300-01 Rice plasma membrane 59.05 58.86
TraesCS4B01G002900.1 Wheat golgi 58.73 58.54
OQU92191 Sorghum plastid 58.1 58.47
TraesCS4D01G002700.2 Wheat mitochondrion, plastid 58.41 58.41
TraesCS4B01G003400.1 Wheat plastid 58.41 58.41
TraesCS4A01G311400.1 Wheat mitochondrion, plastid 58.41 58.23
CDY44096 Canola mitochondrion, plastid 66.67 58.17
CDY69917 Canola endoplasmic reticulum 54.92 56.72
TraesCS1A01G207500.1 Wheat cytosol 56.19 56.19
TraesCS1B01G221200.1 Wheat cytosol 56.19 56.19
Zm00001d025129_P001 Maize mitochondrion 41.59 55.74
Os10t0547900-01 Rice cytosol 55.56 55.73
TraesCS1D01G210800.1 Wheat plastid 55.87 55.35
Zm00001d029840_P003 Maize plastid 58.41 55.09
TraesCS4D01G003400.2 Wheat mitochondrion 55.87 54.66
Os10t0548000-02 Rice cytosol, peroxisome, plastid 54.92 54.23
Solyc09g010510.2.1 Tomato cytosol, mitochondrion, plastid 54.6 53.75
Os04t0291100-01 Rice mitochondrion 53.33 53.5
TraesCS3B01G220800.1 Wheat mitochondrion, plastid 19.37 53.04
Zm00001d019754_P001 Maize mitochondrion, plastid 58.73 52.41
TraesCS4A01G492800.1 Wheat mitochondrion, plastid 19.05 52.17
TraesCS5B01G461100.1 Wheat mitochondrion, plastid 19.05 52.17
Solyc10g086390.1.1 Tomato mitochondrion 53.33 52.01
Solyc08g082870.2.1 Tomato cytosol 43.49 40.65
Solyc03g112540.2.1 Tomato endoplasmic reticulum 45.71 40.0
Solyc06g071610.1.1 Tomato plastid 41.9 36.07
Solyc03g098460.2.1 Tomato cytosol 32.7 26.75
Solyc12g042640.1.1 Tomato cytosol 29.84 25.9
Solyc07g054210.2.1 Tomato plastid 31.43 24.81
Solyc10g006900.2.1 Tomato plastid 31.11 24.81
Solyc12g013710.1.1 Tomato extracellular, nucleus, plastid 30.48 24.18
Protein Annotations
EnsemblPlants:Solyc08g008060.1.1EnsemblPlantsGene:Solyc08g008060.1Gene3D:3.40.50.720GO:GO:0003674GO:GO:0003824GO:GO:0008150
GO:GO:0008152GO:GO:0016491GO:GO:0055114InterPro:NAD(P)-bd_dom_sfInterPro:SDR_famPANTHER:PTHR24320
PANTHER:PTHR24320:SF146PFAM:PF00106PRINTS:PR00080PRINTS:PR00081SEG:segSUPFAM:SSF51735
UniParc:UPI000276CA5FUniProt:K4CIU1MapMan:23.1.3.5.1:::
Description
No Description!
Coordinates
chr8:+:2545509..2549021
Molecular Weight (calculated)
34694.0 Da
IEP (calculated)
9.741
GRAVY (calculated)
-0.104
Length
315 amino acids
Sequence
(BLAST)
001: MWIFGRKGNS GFSCCSTAEE VTKGINGFGL TAIVTGATSG IGVETTRVLA LQGVHVIMAI RNMGNGKKIK EKIVKSIPNA KIDFMELNLS SMESIRKFVK
101: EFNSAGHPLN LLINNAGVMI PPFTLSQDKI ELQFAVNHLG HFLLTNLLLE NMKNTAKNSK KEGRIVNVAS AAHDFAYSQG IIFDKINDKE SYHRFHAYGQ
201: SKLANILHAN ELAIRLKEEG VNITANSVHP GPIATNIMRY DNILHGIVNW IGRYVLKSIE QGASTTCYVA LHQQVKGVSG EYFSDNNIAT NKTTSLAKDL
301: DLAKKLWEFS LDLTK
Best Arabidopsis Sequence Match ( AT4G23420.2 )
(BLAST)
001: MWFFGSKGAS GFSSRSTAEE VTHGVDGTGL TAIVTGASSG IGVETARVLA LRGVHVVMAV RNTGAGAKVK EDIVKQVPGA KVDVMELELS SMESVRKFAS
101: EYKSAGLPLN LLINNAGIMA CPFMLSKDNI ELQFATNHLG HFLLTKLLLD TMKNTSRESK REGRIVNVSS EAHRYSYPEG VRFDKINDES SYSSIRAYGQ
201: SKLCNVLHAN ELAKQLKEDG VNITANSLHP GAIMTNLWGY FNSYLAGAVG AVAKYMVKSV PQGAATTCYV ALNPQVAGVT GEYFSDSNIA KPIELVKDTE
301: LAKKLWDFST KLTDSQ
Arabidopsis Description
NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JNJ2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.