Factsheet for Zm00001d025129_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0291100-01	Rice	mitochondrion	71.49	53.5
PGSC0003DMT400014810	Potato	mitochondrion	49.36	47.35
PGSC0003DMT400040848	Potato	plastid	59.15	44.41
Solyc03g025410.2.1	Tomato	nucleus	58.72	44.09
PGSC0003DMT400040845	Potato	cytosol	58.72	44.09
Solyc03g025390.2.1	Tomato	cytosol	58.3	43.77
PGSC0003DMT400040847	Potato	cytosol	57.87	43.45
VIT_16s0050g00760.t01	Wine grape	plastid	57.45	43.13
Solyc03g025370.2.1	Tomato	cytosol, nucleus, plastid	57.02	42.81
VIT_02s0025g03380.t01	Wine grape	cytosol	57.02	42.54
Solyc08g081200.2.1	Tomato	cytosol	56.6	42.22
PGSC0003DMT400032133	Potato	cytosol	56.6	42.22
KRH59919	Soybean	cytosol, plastid	56.6	42.22
KRG91556	Soybean	cytosol	56.17	42.17
KRH41194	Soybean	cytosol, plastid	56.17	41.9
Solyc08g008060.1.1	Tomato	cytosol	55.74	41.59
KRH38432	Soybean	cytosol	56.17	41.38
Solyc03g025400.2.1	Tomato	cytosol	55.32	41.14
KRH08898	Soybean	cytosol	55.32	41.14
KRH38419	Soybean	plastid	55.74	41.07
KRH38426	Soybean	cytosol	56.6	40.8
KRH38433	Soybean	cytosol	55.32	40.75
KRH08897	Soybean	cytosol, mitochondrion	54.04	40.45
AT4G11410.1	Thale cress	cytosol, mitochondrion	54.04	40.06
KRH38431	Soybean	plastid	54.89	39.94
CDY10884	Canola	plastid	54.47	39.75
KRH08894	Soybean	plastid	36.6	39.63
Bra013690.1-P	Field mustard	plastid	54.47	39.51
KRH35271	Soybean	plastid	58.3	39.26
AT4G23430.2	Thale cress	plastid	53.62	39.13
CDY13264	Canola	cytosol	52.77	39.12
Zm00001d047150_P003	Maize	plastid	52.34	39.05
CDX86777	Canola	cytosol	52.34	38.8
Bra035220.1-P	Field mustard	cytosol	52.34	38.8
CDX76338	Canola	cytosol, plastid	52.77	38.51
Bra020819.1-P	Field mustard	cytosol, plastid	52.77	38.51
Zm00001d039848_P002	Maize	cytosol, mitochondrion, plastid	51.91	38.12
AT4G23420.3	Thale cress	plastid	53.62	37.84
Zm00001d029840_P003	Maize	plastid	53.19	37.43
KRH35274	Soybean	cytosol, mitochondrion, plastid	57.02	37.33
Zm00001d019754_P001	Maize	mitochondrion, plastid	55.32	36.83
CDY44096	Canola	mitochondrion, plastid	54.47	35.46
Zm00001d053067_P001	Maize	plastid	55.32	35.42
Zm00001d039397_P001	Maize	cytosol	36.17	34.98
CDY69917	Canola	endoplasmic reticulum	45.11	34.75
KRH08895	Soybean	cytosol	54.04	33.25
KRG91557	Soybean	cytosol	26.38	29.81
PGSC0003DMT400085601	Potato	plastid	18.72	27.33
Zm00001d045495_P001	Maize	mitochondrion	39.57	25.76
Zm00001d027353_P001	Maize	mitochondrion	39.15	25.48
VIT_16s0050g00750.t01	Wine grape	plastid	57.02	21.44
Zm00001d001820_P001	Maize	plastid	28.09	17.05
Zm00001d032576_P001	Maize	plastid	24.68	14.65
Zm00001d013937_P001	Maize	plastid	24.68	14.65
Zm00001d054039_P001	Maize	cytosol	22.55	12.74
Zm00001d014994_P001	Maize	cytosol	23.4	11.55

Protein Annotations

EnsemblPlants:Zm00001d025129_P001	EnsemblPlants:Zm00001d025129_T001	EnsemblPlantsGene:Zm00001d025129	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR24320
PANTHER:PTHR24320:SF146	ProteinID:AQK43053.1	SUPFAM:SSF51735	UniParc:UPI0008428CFB	UniProt:A0A1D6J539	MapMan:35.1

Description

Short-chain dehydrogenase TIC 32 chloroplastic

Coordinates

chr10:+:105652923..105676382

Molecular Weight (calculated)

25510.9 Da

IEP (calculated)

8.210

GRAVY (calculated)

0.091

Length

235 amino acids

Sequence
(BLAST)

001: MFGFLKQRRQ TPSGFSSSSA AEEVTAGIDG SGLVAIVTGI AFSPFTLSDD GIELQFATNY LGHFLLTNLL LEKMKITAME SGIEGRVVIV ASDSYKHTYR
101: EGIRFDKLND ASGYKGILAY GQSKLANILR SNELSCRLKE EDAKVVVNSL HPGVVATNIT RHLGIIKDIL SPIAKLVLRG VEQGAATVCY LALHPQVAGV
201: TGKYFVDFNA VELKPPATDK ELSKKLWDFS VSLLQ

Best Arabidopsis Sequence Match ( AT2G37540.1 )
(BLAST)

001: MGIYGVMTGK KGKSGFGSAS TAEDVTQAID ASHLTAIITG GTSGIGLEAA RVLAMRGAHV IIAARNPKAA NESKEMILQM NPNARVDYLQ IDVSSIKSVR
101: SFVDQFLALN VPLNILINNA GVMFCPFKLT EDGIESQFAT NHIGHFLLTN LLLDKMKSTA RESGVQGRIV NLSSIAHTYT YSEGIKFQGI NDPAGYSERR
201: AYGQSKLSNL LHSNALSRRL QEEGVNITIN SVHPGLVTTN LFRYSGFSMK VFRAMTFLFW KNIPQGAATT CYVALHPDLE GVTGKYFGDC NIVAPSKFAT
301: NNSLADKLWD FSVFLIDSIS K

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:O80924]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.