Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d003071_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G24050.1 | Zm00001d003071_P001 | AT1G20770.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER87765 | Sorghum | mitochondrion | 89.47 | 89.72 |
| Os06t0129100-01 | Rice | mitochondrion | 80.06 | 81.87 |
| TraesCS7A01G061000.1 | Wheat | mitochondrion, plastid | 74.79 | 76.06 |
| HORVU7Hr1G011180.12 | Barley | plastid | 74.79 | 75.21 |
| TraesCS7D01G055800.1 | Wheat | mitochondrion, plastid | 74.79 | 74.59 |
| TraesCS4A01G428800.1 | Wheat | mitochondrion, plastid | 73.68 | 74.09 |
| GSMUA_Achr8P11870_001 | Banana | cytosol | 67.31 | 71.47 |
| CDY53896 | Canola | plastid | 37.4 | 67.5 |
| KRH41377 | Soybean | cytosol | 62.6 | 67.06 |
| VIT_02s0025g02190.t01 | Wine grape | cytosol | 62.05 | 66.67 |
| Zm00001d027353_P001 | Maize | mitochondrion | 66.2 | 66.2 |
| GSMUA_Achr11P... | Banana | cytosol | 62.88 | 65.8 |
| PGSC0003DMT400031933 | Potato | cytosol | 61.22 | 65.58 |
| Solyc08g082870.2.1 | Tomato | cytosol | 60.66 | 64.99 |
| CDY72311 | Canola | cytosol | 36.01 | 64.36 |
| AT4G24050.1 | Thale cress | cytosol | 59.0 | 64.16 |
| Bra019248.1-P | Field mustard | cytosol | 59.0 | 64.16 |
| Bra013757.1-P | Field mustard | cytosol | 58.73 | 63.86 |
| Bra027706.1-P | Field mustard | plastid | 60.66 | 63.29 |
| CDY72089 | Canola | cytosol | 35.18 | 63.18 |
| AT1G64590.1 | Thale cress | plastid | 58.45 | 63.17 |
| CDY10985 | Canola | cytosol | 57.89 | 62.95 |
| CDX76323 | Canola | cytosol | 57.89 | 62.95 |
| CDY53433 | Canola | plastid | 60.66 | 62.93 |
| Bra027725.1-P | Field mustard | plastid | 60.94 | 62.15 |
| CDY50440 | Canola | mitochondrion | 57.62 | 61.36 |
| Zm00001d039848_P002 | Maize | cytosol, mitochondrion, plastid | 43.49 | 49.06 |
| Zm00001d047150_P003 | Maize | plastid | 41.27 | 47.3 |
| Zm00001d053067_P001 | Maize | plastid | 44.32 | 43.6 |
| Zm00001d019754_P001 | Maize | mitochondrion, plastid | 41.83 | 42.78 |
| Zm00001d029840_P003 | Maize | plastid | 39.06 | 42.22 |
| Zm00001d025129_P001 | Maize | mitochondrion | 25.76 | 39.57 |
| Zm00001d039397_P001 | Maize | cytosol | 26.59 | 39.51 |
| CDY47833 | Canola | cytosol, nucleus, plastid | 60.66 | 24.58 |
| CDY08387 | Canola | cytosol, nucleus, plastid | 60.39 | 24.47 |
| Zm00001d001820_P001 | Maize | plastid | 25.76 | 24.03 |
| Zm00001d032576_P001 | Maize | plastid | 25.48 | 23.23 |
| Zm00001d013937_P001 | Maize | plastid | 25.48 | 23.23 |
| Zm00001d054039_P001 | Maize | cytosol | 25.48 | 22.12 |
| Zm00001d014994_P001 | Maize | cytosol | 26.32 | 19.96 |
| Bra027724.1-P | Field mustard | cytosol, plastid | 0.28 | 0.18 |
Protein Annotations
| EnsemblPlants:Zm00001d045495_P001 | EnsemblPlants:Zm00001d045495_T001 | EnsemblPlantsGene:Zm00001d045495 | EntrezGene:103638146 | Gene3D:3.40.50.720 | InterPro:NAD(P)-bd_dom_sf |
| InterPro:SDR_fam | PANTHER:PTHR24320 | PANTHER:PTHR24320:SF147 | PFAM:PF00106 | PRINTS:PR00080 | PRINTS:PR00081 |
| ProteinID:AQL02406.1 | SEG:seg | SUPFAM:SSF51735 | UniParc:UPI0002220408 | UniProt:K7VBK8 | MapMan:35.1 |
Description
NAD(P)-binding Rossmann-fold superfamily protein
Coordinates
chr9:-:24435849..24437950
Molecular Weight (calculated)
38189.8 Da
IEP (calculated)
9.762
GRAVY (calculated)
0.065
Length
361 amino acids
Sequence
(BLAST)
(BLAST)
001: MLASLRYLAG TAGPSGFGSR TTAEEAAAGD LRHVTAIITG ATSGIGAETA RVLAGRGARL VLPARSLKAA EEARARVRAE CPGADVAVLP LDLSSLASVR
101: RFVARFLDLG LPLNLLVNNA GKYADRFAVS EDGVEMTFAT NYLGHFLLTR LLLDKMADTA RATGVQGRIV NVSSTIHSWF PGDGDALGYL DRVTRRKIPY
201: DPTRAYALSK LANVLHTRAL ADRLSEMGAN VTANCVHPGI VRTRLIRDRD GLITNTVFFL ASKLLKTIPQ AAATTCYVAA HPAVAGVSGK YFADCNEASP
301: SRLGASCEEA ARLWAFSENV TAEKVQRTTT TTGVHVAVGT GLLRPQAHQS SDADRAMALA A
101: RFVARFLDLG LPLNLLVNNA GKYADRFAVS EDGVEMTFAT NYLGHFLLTR LLLDKMADTA RATGVQGRIV NVSSTIHSWF PGDGDALGYL DRVTRRKIPY
201: DPTRAYALSK LANVLHTRAL ADRLSEMGAN VTANCVHPGI VRTRLIRDRD GLITNTVFFL ASKLLKTIPQ AAATTCYVAA HPAVAGVSGK YFADCNEASP
301: SRLGASCEEA ARLWAFSENV TAEKVQRTTT TTGVHVAVGT GLLRPQAHQS SDADRAMALA A
001: MIETGKYLLG AAGASGFGSK STAEEVTENC DLRSITAVIT GATSGIGAET ARVLAKRGAR LIFPARNVKA AEEAKERIVS EFPETEIVVM KLDLSSIASV
101: RNFVADFESL DLPLNLLINN AGKLAHEHAI SEDGIEMTFA TNYLGHFLLT NLLLNKMIQT AEETGVQGRI VNVTSGIHGW FSGDLIEYLR LISQPKCQFD
201: ATRAYALSKL ANVLHTKELS SRLQKIGANV TVNCVHPGVV RTRLTRDREG LLTDLVFFLA SKLVKTVPQA AATTCYVATN PRLVNVSGKY FTDCNETTPS
301: GLGTNSSEAT KLWAASEILV TQHSKTSFDP CS
101: RNFVADFESL DLPLNLLINN AGKLAHEHAI SEDGIEMTFA TNYLGHFLLT NLLLNKMIQT AEETGVQGRI VNVTSGIHGW FSGDLIEYLR LISQPKCQFD
201: ATRAYALSKL ANVLHTKELS SRLQKIGANV TVNCVHPGVV RTRLTRDREG LLTDLVFFLA SKLVKTVPQA AATTCYVATN PRLVNVSGKY FTDCNETTPS
301: GLGTNSSEAT KLWAASEILV TQHSKTSFDP CS
Arabidopsis Description
AT4g24050/T19F6_40 [Source:UniProtKB/TrEMBL;Acc:O22985]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.