Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019248.1-P | Field mustard | cytosol | 92.47 | 92.47 |
| CDY10985 | Canola | cytosol | 91.87 | 91.87 |
| CDX76323 | Canola | cytosol | 91.57 | 91.57 |
| Bra013757.1-P | Field mustard | cytosol | 91.27 | 91.27 |
| CDY50440 | Canola | mitochondrion | 90.96 | 89.09 |
| CDY72089 | Canola | cytosol | 53.92 | 89.05 |
| CDY72311 | Canola | cytosol | 53.92 | 88.61 |
| Solyc08g082870.2.1 | Tomato | cytosol | 77.11 | 75.96 |
| KRH41377 | Soybean | cytosol | 76.81 | 75.67 |
| VIT_02s0025g02190.t01 | Wine grape | cytosol | 76.51 | 75.6 |
| PGSC0003DMT400031933 | Potato | cytosol | 76.2 | 75.07 |
| AT1G64590.1 | Thale cress | plastid | 71.39 | 70.96 |
| GSMUA_Achr8P11870_001 | Banana | cytosol | 68.98 | 67.35 |
| Os03t0115700-01 | Rice | mitochondrion | 66.27 | 66.27 |
| TraesCS5A01G527400.1 | Wheat | mitochondrion | 66.27 | 66.07 |
| TraesCS4D01G351800.1 | Wheat | mitochondrion | 66.27 | 65.87 |
| TraesCS4B01G358400.1 | Wheat | mitochondrion | 65.96 | 65.77 |
| TraesCS4B01G358200.1 | Wheat | mitochondrion, plastid | 65.06 | 64.86 |
| TraesCS5A01G527300.1 | Wheat | mitochondrion | 66.27 | 64.71 |
| TraesCS4B01G358500.1 | Wheat | mitochondrion | 66.27 | 63.95 |
| GSMUA_Achr11P... | Banana | cytosol | 66.27 | 63.77 |
| HORVU4Hr1G086380.1 | Barley | mitochondrion, plastid | 65.96 | 63.29 |
| TraesCS4D01G351700.1 | Wheat | mitochondrion, plastid | 65.66 | 61.93 |
| Os06t0129100-01 | Rice | mitochondrion | 64.76 | 60.91 |
| OQU93381 | Sorghum | mitochondrion | 64.76 | 60.56 |
| TraesCS4B01G358300.1 | Wheat | plastid | 56.33 | 59.94 |
| Zm00001d027353_P001 | Maize | mitochondrion | 64.46 | 59.28 |
| Zm00001d045495_P001 | Maize | mitochondrion | 64.16 | 59.0 |
| EER87765 | Sorghum | mitochondrion | 63.55 | 58.61 |
| TraesCS7A01G061000.1 | Wheat | mitochondrion, plastid | 61.75 | 57.75 |
| HORVU7Hr1G011180.12 | Barley | plastid | 62.35 | 57.66 |
| TraesCS4A01G428800.1 | Wheat | mitochondrion, plastid | 61.45 | 56.82 |
| TraesCS7D01G055800.1 | Wheat | mitochondrion, plastid | 61.45 | 56.35 |
| AT2G37540.1 | Thale cress | cytosol | 49.1 | 50.78 |
| AT5G50130.1 | Thale cress | mitochondrion | 50.9 | 49.85 |
| AT5G02540.1 | Thale cress | mitochondrion | 48.8 | 48.94 |
| AT4G23430.2 | Thale cress | plastid | 44.28 | 45.65 |
| AT4G11410.1 | Thale cress | cytosol, mitochondrion | 42.77 | 44.8 |
| AT4G23420.3 | Thale cress | plastid | 44.28 | 44.14 |
| AT5G53100.1 | Thale cress | cytosol, golgi, mitochondrion, plasma membrane | 29.52 | 26.92 |
| AT5G53090.1 | Thale cress | cytosol | 29.22 | 25.87 |
| AT4G27760.1 | Thale cress | cytosol | 29.22 | 25.8 |
| AT1G03630.1 | Thale cress | plastid | 28.92 | 23.94 |
| AT4G27440.1 | Thale cress | plastid | 28.31 | 23.44 |
| AT5G54190.1 | Thale cress | plastid | 26.81 | 21.98 |
Protein Annotations
| Gene3D:3.40.50.720 | MapMan:35.1 | EntrezGene:828505 | ProteinID:AAB63619.1 | ProteinID:AEE84845.1 | EMBL:AF439829 |
| ArrayExpress:AT4G24050 | EnsemblPlantsGene:AT4G24050 | RefSeq:AT4G24050 | TAIR:AT4G24050 | RefSeq:AT4G24050-TAIR-G | EnsemblPlants:AT4G24050.1 |
| TAIR:AT4G24050.1 | EMBL:AY125561 | ProteinID:CAB51648.1 | ProteinID:CAB81323.1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016491 | GO:GO:0055114 | InterPro:NAD(P)-bd_dom_sf | RefSeq:NP_194136.1 |
| UniProt:O22985 | PFAM:PF00106 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0025022 |
| PO:PO:0025281 | PRINTS:PR00081 | PANTHER:PTHR24320 | PANTHER:PTHR24320:SF114 | InterPro:SDR_fam | SUPFAM:SSF51735 |
| UniParc:UPI00000AB6AD | SEG:seg | : | : | : | : |
Description
AT4g24050/T19F6_40 [Source:UniProtKB/TrEMBL;Acc:O22985]
Coordinates
chr4:+:12497055..12500326
Molecular Weight (calculated)
35842.0 Da
IEP (calculated)
7.152
GRAVY (calculated)
0.022
Length
332 amino acids
Sequence
(BLAST)
(BLAST)
001: MIETGKYLLG AAGASGFGSK STAEEVTENC DLRSITAVIT GATSGIGAET ARVLAKRGAR LIFPARNVKA AEEAKERIVS EFPETEIVVM KLDLSSIASV
101: RNFVADFESL DLPLNLLINN AGKLAHEHAI SEDGIEMTFA TNYLGHFLLT NLLLNKMIQT AEETGVQGRI VNVTSGIHGW FSGDLIEYLR LISQPKCQFD
201: ATRAYALSKL ANVLHTKELS SRLQKIGANV TVNCVHPGVV RTRLTRDREG LLTDLVFFLA SKLVKTVPQA AATTCYVATN PRLVNVSGKY FTDCNETTPS
301: GLGTNSSEAT KLWAASEILV TQHSKTSFDP CS
101: RNFVADFESL DLPLNLLINN AGKLAHEHAI SEDGIEMTFA TNYLGHFLLT NLLLNKMIQT AEETGVQGRI VNVTSGIHGW FSGDLIEYLR LISQPKCQFD
201: ATRAYALSKL ANVLHTKELS SRLQKIGANV TVNCVHPGVV RTRLTRDREG LLTDLVFFLA SKLVKTVPQA AATTCYVATN PRLVNVSGKY FTDCNETTPS
301: GLGTNSSEAT KLWAASEILV TQHSKTSFDP CS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.