Factsheet for GSMUA_Achr8P11870_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P03500_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24050.1	GSMUA_Achr1P03500_001	AT1G20770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	80.0	78.84
TraesCS5A01G527400.1	Wheat	mitochondrion	72.94	74.47
TraesCS4D01G351800.1	Wheat	mitochondrion	72.94	74.25
TraesCS4B01G358400.1	Wheat	mitochondrion	72.65	74.17
TraesCS4B01G358200.1	Wheat	mitochondrion, plastid	72.35	73.87
VIT_02s0025g02190.t01	Wine grape	cytosol	72.94	73.81
Os03t0115700-01	Rice	mitochondrion	71.76	73.49
TraesCS5A01G527300.1	Wheat	mitochondrion	73.24	73.24
CDY53896	Canola	plastid	42.65	72.5
KRH41377	Soybean	cytosol	71.76	72.4
Solyc08g082870.2.1	Tomato	cytosol	71.76	72.4
TraesCS4B01G358500.1	Wheat	mitochondrion	73.24	72.38
PGSC0003DMT400031933	Potato	cytosol	71.47	72.11
HORVU4Hr1G086380.1	Barley	mitochondrion, plastid	72.35	71.1
TraesCS4D01G351700.1	Wheat	mitochondrion, plastid	72.06	69.6
OQU93381	Sorghum	mitochondrion	72.65	69.58
CDY72311	Canola	cytosol	41.18	69.31
Bra019248.1-P	Field mustard	cytosol	67.65	69.28
AT4G24050.1	Thale cress	cytosol	67.35	68.98
AT1G64590.1	Thale cress	plastid	67.65	68.86
Bra013757.1-P	Field mustard	cytosol	66.76	68.37
CDY72089	Canola	cytosol	40.29	68.16
Os06t0129100-01	Rice	mitochondrion	70.59	67.99
Bra027706.1-P	Field mustard	plastid	69.12	67.92
CDX76323	Canola	cytosol	66.18	67.77
Zm00001d027353_P001	Maize	mitochondrion	71.76	67.59
EER87765	Sorghum	mitochondrion	71.47	67.5
CDY10985	Canola	cytosol	65.88	67.47
Zm00001d045495_P001	Maize	mitochondrion	71.47	67.31
CDY53433	Canola	plastid	68.82	67.24
TraesCS7A01G061000.1	Wheat	mitochondrion, plastid	69.12	66.2
CDY50440	Canola	mitochondrion	65.59	65.78
HORVU7Hr1G011180.12	Barley	plastid	69.41	65.74
TraesCS4B01G358300.1	Wheat	plastid	60.29	65.71
Bra027725.1-P	Field mustard	plastid	67.65	64.97
TraesCS7D01G055800.1	Wheat	mitochondrion, plastid	69.12	64.92
TraesCS4A01G428800.1	Wheat	mitochondrion, plastid	68.53	64.9
GSMUA_Achr1P25440_001	Banana	cytosol	46.18	50.97
GSMUA_Achr11P...	Banana	cytosol	47.35	49.69
GSMUA_Achr8P20890_001	Banana	cytosol, mitochondrion, plastid	45.88	48.75
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	45.59	48.29
GSMUA_Achr7P15240_001	Banana	plastid	45.29	47.53
GSMUA_Achr2P18620_001	Banana	plastid	43.53	46.84
GSMUA_AchrUn_...	Banana	cytosol	40.88	44.41
GSMUA_Achr2P08080_001	Banana	mitochondrion	42.06	44.0
CDY47833	Canola	cytosol, nucleus, plastid	69.12	26.37
CDY08387	Canola	cytosol, nucleus, plastid	69.12	26.37
GSMUA_Achr11P...	Banana	plastid	28.53	24.49
GSMUA_Achr7P04190_001	Banana	cytosol	28.82	23.9
GSMUA_Achr7P04280_001	Banana	plastid	26.76	22.86
GSMUA_Achr3P14270_001	Banana	plastid	25.29	22.22
GSMUA_Achr3P22130_001	Banana	cytosol	41.47	20.03
GSMUA_AchrUn_...	Banana	cytosol	10.88	14.57
Bra027724.1-P	Field mustard	cytosol, plastid	1.18	0.73

Protein Annotations

EnsemblPlants:GSMUA_Achr8P11870_001	EnsemblPlants:GSMUA_Achr8T11870_001	EnsemblPlantsGene:GSMUA_Achr8G11870_001	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
PANTHER:PTHR24320	PANTHER:PTHR24320:SF114	PFAM:PF00106	PRINTS:PR00081	SEG:seg	SUPFAM:SSF51735
UniParc:UPI00029567C2	UniProt:M0TPP0	MapMan:35.1	:	:	:

Description

Putative WW domain-containing oxidoreductase [Source:GMGC_GENE;Acc:GSMUA_Achr8G11870_001]

Coordinates

chr8:-:8610926..8612991

Molecular Weight (calculated)

36418.7 Da

IEP (calculated)

8.233

GRAVY (calculated)

0.016

Length

340 amino acids

Sequence
(BLAST)

001: MLEAVKYLIG SAGASGFGSR STGEEVTAAA PDLRSITAII TGATSGIGAE TARVLAMRGA RLVLPARSLK AAEETRARIA AAFPGADVIV LPLDLSSLSS
101: VRCFVARFLA LHLPLNLLIN NAGKFSHEHA VSEDGVEMTF ATNYLGHFLL TKLLLPKMAE TASETGIQGR IVNVSSSIHG WFSGDCLRYL DLMTRKKIRY
201: DATQAYALSK LANVHHTKEL TGRLERMDAD VTANCVHPGI VRTRLTRDRE GLVTDLAFFL ASKLLKTIPQ AAATTCYVAT HPRLAGASGK YFADCNEASP
301: SSLASSPHEA GRLWRASESM TAPRFGPEPA FPSDSPDEEM

Best Arabidopsis Sequence Match ( AT4G24050.1 )
(BLAST)

001: MIETGKYLLG AAGASGFGSK STAEEVTENC DLRSITAVIT GATSGIGAET ARVLAKRGAR LIFPARNVKA AEEAKERIVS EFPETEIVVM KLDLSSIASV
101: RNFVADFESL DLPLNLLINN AGKLAHEHAI SEDGIEMTFA TNYLGHFLLT NLLLNKMIQT AEETGVQGRI VNVTSGIHGW FSGDLIEYLR LISQPKCQFD
201: ATRAYALSKL ANVLHTKELS SRLQKIGANV TVNCVHPGVV RTRLTRDREG LLTDLVFFLA SKLVKTVPQA AATTCYVATN PRLVNVSGKY FTDCNETTPS
301: GLGTNSSEAT KLWAASEILV TQHSKTSFDP CS

Arabidopsis Description

AT4g24050/T19F6_40 [Source:UniProtKB/TrEMBL;Acc:O22985]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.