Factsheet for GSMUA_Achr11P24450_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P20890_001	Banana	cytosol, mitochondrion, plastid	79.01	80.0
GSMUA_Achr7P15240_001	Banana	plastid	79.32	79.32
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	77.78	78.5
VIT_08s0040g03400.t01	Wine grape	plastid	74.38	74.38
KRH32305	Soybean	plastid	72.22	72.45
Solyc10g086390.1.1	Tomato	mitochondrion	72.22	72.45
PGSC0003DMT400022813	Potato	mitochondrion	71.3	72.19
PGSC0003DMT400049292	Potato	mitochondrion	71.91	72.14
EES02479	Sorghum	cytosol, plastid	70.99	71.88
Zm00001d039848_P002	Maize	cytosol, mitochondrion, plastid	70.68	71.56
KRH67540	Soybean	nucleus	71.3	71.52
KRH19708	Soybean	nucleus	70.99	71.21
TraesCS3B01G091800.3	Wheat	cytosol	69.75	70.62
TraesCS5B01G279400.1	Wheat	plastid	70.06	70.5
Os01t0151700-01	Rice	cytosol	69.75	70.41
Solyc09g010510.2.1	Tomato	cytosol, mitochondrion, plastid	69.44	70.31
KRG95813	Soybean	nucleus	70.06	70.28
TraesCS5D01G287000.1	Wheat	plastid	69.75	70.19
TraesCS5A01G280400.1	Wheat	plastid	69.14	69.57
CDY10440	Canola	plastid	68.83	68.62
CDY40365	Canola	mitochondrion	70.06	68.58
Bra009580.1-P	Field mustard	mitochondrion	69.75	68.28
AT5G02540.1	Thale cress	mitochondrion	69.44	67.98
CDY68648	Canola	cytosol	43.83	67.94
Bra017180.1-P	Field mustard	cytosol	67.28	67.91
CDY18436	Canola	cytosol	66.98	67.6
Bra005188.1-P	Field mustard	cytosol	66.05	67.51
CDY52816	Canola	cytosol	66.67	67.5
CDX81232	Canola	cytosol	66.67	67.29
CDX74954	Canola	cytosol	66.36	67.19
CDY52817	Canola	cytosol	66.05	66.88
Bra005729.1-P	Field mustard	mitochondrion	67.9	66.47
CDY11217	Canola	mitochondrion	67.9	66.47
CDX88292	Canola	cytosol	31.17	64.33
CDY55418	Canola	cytosol	58.95	63.88
AT2G37540.1	Thale cress	cytosol	63.27	63.86
TraesCS3A01G077400.2	Wheat	cytosol, plastid	68.83	63.71
HORVU3Hr1G013970.6	Barley	plastid	69.75	63.66
CDY10441	Canola	cytosol, extracellular, mitochondrion, plastid	25.62	60.58
GSMUA_Achr2P18620_001	Banana	plastid	58.02	59.49
GSMUA_AchrUn_...	Banana	cytosol	56.48	58.47
TraesCS3D01G077500.2	Wheat	cytosol, plastid	62.65	58.0
HORVU5Hr1G075530.8	Barley	cytosol, nucleus, plastid	69.44	57.99
GSMUA_Achr2P08080_001	Banana	mitochondrion	58.02	57.85
Zm00001d039397_P001	Maize	cytosol	40.12	53.5
GSMUA_Achr8P11870_001	Banana	cytosol	49.69	47.35
GSMUA_Achr1P25440_001	Banana	cytosol	44.44	46.75
GSMUA_Achr11P...	Banana	cytosol	49.69	46.67
GSMUA_Achr11P...	Banana	plastid	32.72	26.77
GSMUA_Achr3P14270_001	Banana	plastid	31.48	26.36
GSMUA_Achr7P04280_001	Banana	plastid	31.48	25.63
GSMUA_Achr3P22130_001	Banana	cytosol	52.78	24.29
GSMUA_Achr7P04190_001	Banana	cytosol	28.4	22.44
GSMUA_AchrUn_...	Banana	cytosol	12.04	15.35

Protein Annotations

EnsemblPlants:GSMUA_Achr11P24450_001	EnsemblPlants:GSMUA_Achr11T24450_001	EnsemblPlantsGene:GSMUA_Achr11G24450_001	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
PANTHER:PTHR24320	PANTHER:PTHR24320:SF81	PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081	SEG:seg
SUPFAM:SSF51735	UniParc:UPI000296517E	UniProt:M0RV25	MapMan:35.1	:	:

Description

Putative Retinol dehydrogenase 14 [Source:GMGC_GENE;Acc:GSMUA_Achr11G24450_001]

Coordinates

chr11:+:23990086..23991572

Molecular Weight (calculated)

35291.6 Da

IEP (calculated)

8.852

GRAVY (calculated)

-0.059

Length

324 amino acids

Sequence
(BLAST)

001: MGIFSLVTGL PGPSGFGSSS TAEQVTEGVD ASNLTVIITG GASGIGAETA RVFALRGAHV IIAARNMEAA TDAKQLILKT TPSARVDLLE LDLSSLKSVR
101: AFSDKFLSMD LPLNILINNA GVMFCPHQLS EDGTEMQFAT NHIGHFQLTN LLLEKMKSTA RKTGIEGRIV NLSSVAHIYT YEDGIRFSEL NEKYGYSSKK
201: AYGQSKLANI LHANELSRRL QEEGANVTVN SVHPGLIMTN LMRHTLFLMR MLKMVSYILW KNVPQGAATT CYVALHPSVK GASGKYFVDC NEAKPSSLAG
301: DETLARRLWD FSEKLVNAKS CDRR

Best Arabidopsis Sequence Match ( AT5G02540.1 )
(BLAST)

001: MGLYSLITGR RGPSGFGSAS TAEEVTQGID ATNLTAIITG GTGGIGMETA RVLSKRGAHV VIGARNMGAA ENAKTEILRQ NANARVTLLQ LDLSSIKSIK
101: AFVREFHALH LPLNLLINNA GVMFCPYQLS EDGIELQFAT NHIGHFLLTN LLLDTMKNTA KTSGVEGRIL NVSSVAHIYT YQEGIQFDSI NDICSYSDKR
201: AYGQSKLANI LHANELSRQL QEEGVNITAN SVHPGLILTN LFQHTALLMR FLKFFSFYLW KNIPQGAATT CYVALHPSVK GVTGKYFADC NEVTPSKLAR
301: DETLAQKLWD FSVKLINSVS KKNYLGFDDT T

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KCF2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.