Factsheet for Bra005729.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11217	Canola	mitochondrion	99.4	99.4
Bra009580.1-P	Field mustard	mitochondrion	92.14	92.14
AT5G02540.1	Thale cress	mitochondrion	91.24	91.24
Bra017180.1-P	Field mustard	cytosol	68.58	70.72
VIT_08s0040g03400.t01	Wine grape	plastid	69.18	70.68
GSMUA_Achr8P20890_001	Banana	cytosol, mitochondrion, plastid	67.37	69.69
Bra005188.1-P	Field mustard	cytosol	66.16	69.09
KRH19708	Soybean	nucleus	67.37	69.04
Solyc10g086390.1.1	Tomato	mitochondrion	67.07	68.73
PGSC0003DMT400049292	Potato	mitochondrion	66.77	68.42
KRH32305	Soybean	plastid	66.77	68.42
GSMUA_Achr7P15240_001	Banana	plastid	66.77	68.21
PGSC0003DMT400022813	Potato	mitochondrion	65.86	68.12
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	65.86	67.91
GSMUA_Achr11P...	Banana	cytosol	66.47	67.9
KRH67540	Soybean	nucleus	65.56	67.18
KRG95813	Soybean	nucleus	65.26	66.87
Solyc09g010510.2.1	Tomato	cytosol, mitochondrion, plastid	64.05	66.25
Zm00001d039848_P002	Maize	cytosol, mitochondrion, plastid	63.75	65.94
EES02479	Sorghum	cytosol, plastid	63.44	65.62
TraesCS3B01G091800.3	Wheat	cytosol	61.93	64.06
Os01t0151700-01	Rice	cytosol	61.93	63.86
TraesCS5B01G279400.1	Wheat	plastid	61.63	63.35
TraesCS5D01G287000.1	Wheat	plastid	61.33	63.04
TraesCS5A01G280400.1	Wheat	plastid	60.73	62.42
TraesCS3A01G077400.2	Wheat	cytosol, plastid	60.42	57.14
HORVU3Hr1G013970.6	Barley	plastid	60.42	56.34
Bra013690.1-P	Field mustard	plastid	53.78	54.94
Bra020819.1-P	Field mustard	cytosol, plastid	53.17	54.66
Bra035220.1-P	Field mustard	cytosol	52.27	54.57
Zm00001d039397_P001	Maize	cytosol	39.88	54.32
HORVU5Hr1G075530.8	Barley	cytosol, nucleus, plastid	60.73	51.8
TraesCS3D01G077500.2	Wheat	cytosol, plastid	53.78	50.86
Bra019248.1-P	Field mustard	cytosol	48.64	48.49
Bra013757.1-P	Field mustard	cytosol	47.13	46.99
Bra027706.1-P	Field mustard	plastid	46.83	44.8
Bra027725.1-P	Field mustard	plastid	46.53	43.5
Bra037939.1-P	Field mustard	cytosol	45.32	30.18
Bra033415.1-P	Field mustard	plastid	29.91	24.75
Bra026349.1-P	Field mustard	plastid	28.7	24.48
Bra019049.1-P	Field mustard	plastid	29.31	24.37
Bra030540.1-P	Field mustard	plastid	29.0	24.12
Bra026308.1-P	Field mustard	cytosol, nucleus, peroxisome	26.89	23.86
Bra003004.1-P	Field mustard	plastid	28.7	23.57
Bra029096.1-P	Field mustard	nucleus	26.28	23.02
Bra019028.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	26.59	21.67
Bra022628.1-P	Field mustard	cytosol, mitochondrion	25.98	21.45
Bra027724.1-P	Field mustard	cytosol, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:Bra005729.1	EnsemblPlants:Bra005729.1-P	EnsemblPlantsGene:Bra005729	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
PANTHER:PTHR24320	PANTHER:PTHR24320:SF81	PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081	SEG:seg
SUPFAM:SSF51735	UniParc:UPI000253FAAE	UniProt:M4CNE1	MapMan:35.1	:	:

Description

AT5G02540 (E=8e-168) | short-chain dehydrogenase/reductase (SDR) family protein

Coordinates

chrA03:+:324779..327062

Molecular Weight (calculated)

36492.1 Da

IEP (calculated)

9.101

GRAVY (calculated)

0.001

Length

331 amino acids

Sequence
(BLAST)

001: MGLYSLITGR RGPSGFGSAT SAEEVTQRID ATHLTAIITG GAGGIGMETA RVMAKRGVHA VIGARNIGAA ENAKAEILRQ NTNARVTLLH LDLSSVKSIR
101: AFVRDFHALH LPLNLLINNA GVMFCPYQLS EDEIELQFAT NHIGHFLLTN LLLDTMKTTA KTSGVEGRIL NLSSIAHIYT YKEGIKFDSI NDICCYSDKR
201: AYGQSKLANI LHANELSRQL QEEGVNITVN SVHPGLILTN LFQHTALLMR FLKFFSFYLW KNIPQGAATT CYVALHPTLK GVTGKYFADC NEVTPSKLAR
301: DETLARKLWD FSVKLINSVS KKNYLGFEDT I

Best Arabidopsis Sequence Match ( AT5G02540.1 )
(BLAST)

001: MGLYSLITGR RGPSGFGSAS TAEEVTQGID ATNLTAIITG GTGGIGMETA RVLSKRGAHV VIGARNMGAA ENAKTEILRQ NANARVTLLQ LDLSSIKSIK
101: AFVREFHALH LPLNLLINNA GVMFCPYQLS EDGIELQFAT NHIGHFLLTN LLLDTMKNTA KTSGVEGRIL NVSSVAHIYT YQEGIQFDSI NDICSYSDKR
201: AYGQSKLANI LHANELSRQL QEEGVNITAN SVHPGLILTN LFQHTALLMR FLKFFSFYLW KNIPQGAATT CYVALHPSVK GVTGKYFADC NEVTPSKLAR
301: DETLAQKLWD FSVKLINSVS KKNYLGFDDT T

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KCF2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.