Factsheet for Bra019248.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012248.1-P
Bra016454.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24050.1	Bra012248.1-P	AT1G20770.1	21798944
AT4G24050.1	Bra016454.1-P	AT1G20770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10985	Canola	cytosol	97.59	97.59
CDX76323	Canola	cytosol	95.48	95.48
Bra013757.1-P	Field mustard	cytosol	94.88	94.88
CDY50440	Canola	mitochondrion	96.08	94.1
AT4G24050.1	Thale cress	cytosol	92.47	92.47
Solyc08g082870.2.1	Tomato	cytosol	77.11	75.96
PGSC0003DMT400031933	Potato	cytosol	76.51	75.37
KRH41377	Soybean	cytosol	75.9	74.78
VIT_02s0025g02190.t01	Wine grape	cytosol	75.3	74.4
Bra027706.1-P	Field mustard	plastid	75.0	71.97
Bra027725.1-P	Field mustard	plastid	73.49	68.93
GSMUA_Achr8P11870_001	Banana	cytosol	69.28	67.65
TraesCS5A01G527400.1	Wheat	mitochondrion	65.96	65.77
TraesCS4D01G351800.1	Wheat	mitochondrion	65.96	65.57
TraesCS4B01G358400.1	Wheat	mitochondrion	65.66	65.47
TraesCS4B01G358200.1	Wheat	mitochondrion, plastid	65.36	65.17
GSMUA_Achr11P...	Banana	cytosol	67.17	64.64
Os03t0115700-01	Rice	mitochondrion	64.46	64.46
TraesCS5A01G527300.1	Wheat	mitochondrion	65.96	64.41
TraesCS4B01G358500.1	Wheat	mitochondrion	65.96	63.66
HORVU4Hr1G086380.1	Barley	mitochondrion, plastid	65.66	63.01
TraesCS4D01G351700.1	Wheat	mitochondrion, plastid	65.36	61.65
Os06t0129100-01	Rice	mitochondrion	64.46	60.62
OQU93381	Sorghum	mitochondrion	64.46	60.28
TraesCS4B01G358300.1	Wheat	plastid	56.63	60.26
Zm00001d027353_P001	Maize	mitochondrion	64.16	59.0
Zm00001d045495_P001	Maize	mitochondrion	64.16	59.0
EER87765	Sorghum	mitochondrion	63.55	58.61
HORVU7Hr1G011180.12	Barley	plastid	62.65	57.94
TraesCS7A01G061000.1	Wheat	mitochondrion, plastid	61.75	57.75
TraesCS7D01G055800.1	Wheat	mitochondrion, plastid	62.05	56.91
TraesCS4A01G428800.1	Wheat	mitochondrion, plastid	61.14	56.55
Bra017180.1-P	Field mustard	cytosol	50.0	51.71
Bra005188.1-P	Field mustard	cytosol	49.1	51.42
Bra005729.1-P	Field mustard	mitochondrion	48.49	48.64
Bra009580.1-P	Field mustard	mitochondrion	48.49	48.64
Bra020819.1-P	Field mustard	cytosol, plastid	44.28	45.65
Bra035220.1-P	Field mustard	cytosol	43.07	45.11
Bra013690.1-P	Field mustard	plastid	43.98	45.06
Bra037939.1-P	Field mustard	cytosol	51.51	34.41
Bra026308.1-P	Field mustard	cytosol, nucleus, peroxisome	30.42	27.08
Bra029096.1-P	Field mustard	nucleus	29.82	26.19
Bra019028.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	30.12	24.63
Bra033415.1-P	Field mustard	plastid	28.92	24.0
Bra019049.1-P	Field mustard	plastid	28.31	23.62
Bra022628.1-P	Field mustard	cytosol, mitochondrion	28.31	23.44
Bra030540.1-P	Field mustard	plastid	28.01	23.37
Bra026349.1-P	Field mustard	plastid	26.81	22.94
Bra003004.1-P	Field mustard	plastid	27.41	22.58
Bra027724.1-P	Field mustard	cytosol, plastid	0.6	0.37

Protein Annotations

EnsemblPlants:Bra019248.1	EnsemblPlants:Bra019248.1-P	EnsemblPlantsGene:Bra019248	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
PANTHER:PTHR24320	PANTHER:PTHR24320:SF114	PFAM:PF00106	PRINTS:PR00081	SEG:seg	SUPFAM:SSF51735
UniParc:UPI0002540F70	UniProt:M4DRV5	MapMan:35.1	:	:	:

Description

AT4G24050 (E=6e-166) | short-chain dehydrogenase/reductase (SDR) family protein

Coordinates

chrA03:+:25470087..25472581

Molecular Weight (calculated)

35780.9 Da

IEP (calculated)

7.927

GRAVY (calculated)

0.008

Length

332 amino acids

Sequence
(BLAST)

001: MIETGRYLIG VAGASGFGSK STADEVTENC DLRSTTAIIT GATSGIGAET ARVLAKRGAR LVFPARNVKA AEEAKGRIVS EFPEAEIVVM ELDLSSISSV
101: RSFVAGFESL HLPLNLLINN AGRLAHEHAI SEDGIEMTFA TNYLGHFLLT NLLLKKMIQT AEETGVQGRI VNVTSGIHGW FSGDLIEYLR QISQPKCQFD
201: ATRAYALSKL ANVLHTKELS SRLQKIGANV TVNCVHPGVV KTRLTRDREG LLTDLVFFLT SKLLKTVPQA AATTCYVATN PRLMNVSGKY FTDCNETTPS
301: GLGSNSSEAS KLWAASEILV TQHSKTGFDP LS

Best Arabidopsis Sequence Match ( AT4G24050.1 )
(BLAST)

001: MIETGKYLLG AAGASGFGSK STAEEVTENC DLRSITAVIT GATSGIGAET ARVLAKRGAR LIFPARNVKA AEEAKERIVS EFPETEIVVM KLDLSSIASV
101: RNFVADFESL DLPLNLLINN AGKLAHEHAI SEDGIEMTFA TNYLGHFLLT NLLLNKMIQT AEETGVQGRI VNVTSGIHGW FSGDLIEYLR LISQPKCQFD
201: ATRAYALSKL ANVLHTKELS SRLQKIGANV TVNCVHPGVV RTRLTRDREG LLTDLVFFLA SKLVKTVPQA AATTCYVATN PRLVNVSGKY FTDCNETTPS
301: GLGTNSSEAT KLWAASEILV TQHSKTSFDP CS

Arabidopsis Description

AT4g24050/T19F6_40 [Source:UniProtKB/TrEMBL;Acc:O22985]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.