Factsheet for Bra016454.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000871.1-P
Bra004879.1-P
Bra006453.1-P
Bra010996.1-P
Bra012474.1-P
Bra013757.1-P
Bra013840.1-P
Bra018537.1-P
Bra019205.1-P
Bra019248.1-P
Bra024741.1-P
Bra035030.1-P
Bra036253.1-P
Bra039992.1-P
Bra040332.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20770.1	Bra010996.1-P	AT1G25490.1	21798944
AT1G20770.1	Bra012474.1-P	AT1G25490.1	21798944
AT1G20770.1	Bra024741.1-P	AT1G25490.1	21798944
AT1G20770.1	Bra035030.1-P	AT1G25490.1	21798944
AT1G20770.1	Bra039992.1-P	AT1G25490.1	21798944
AT1G20770.1	Bra004879.1-P	AT2G44950.1	21798944
AT1G20770.1	Bra040332.1-P	AT2G44950.1	21798944
AT1G20770.1	Bra000871.1-P	AT4G02620.1	21798944
AT1G20770.1	Bra018537.1-P	AT4G02620.1	21798944
AT1G20770.1	Bra036253.1-P	AT4G02620.1	21798944
AT1G20770.1	Bra013757.1-P	AT4G24050.1	21798944
AT1G20770.1	Bra019248.1-P	AT4G24050.1	21798944
AT1G20770.1	Bra006453.1-P	AT4G24840.1	21798944
AT1G20770.1	Bra013840.1-P	AT4G24840.1	21798944
AT1G20770.1	Bra019205.1-P	AT4G24840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96624	Canola	nucleus	89.72	100.0
Bra012248.1-P	Field mustard	cytosol	78.5	76.71
AT1G20770.1	Thale cress	nucleus	75.7	75.35
KRG95442	Soybean	cytosol	32.24	48.59
KRH67118	Soybean	nucleus	42.06	43.9
Zm00001d003071_P001	Maize	cytosol	45.79	43.36
Os04t0509200-01	Rice	cytosol	45.79	43.17
GSMUA_Achr1P03500_001	Banana	nucleus	43.93	42.73
VIT_18s0122g01060.t01	Wine grape	nucleus	45.79	42.61
OQU81934	Sorghum	cytosol	44.39	42.22
HORVU2Hr1G088210.1	Barley	cytosol, nucleus, plastid	43.93	41.41
PGSC0003DMT400003346	Potato	nucleus	42.06	41.28
TraesCS2D01G362600.1	Wheat	nucleus	42.99	40.71
TraesCS2B01G383200.1	Wheat	nucleus	42.99	40.53
TraesCS2A01G364600.1	Wheat	cytosol	41.59	39.21
TraesCS1D01G288900.1	Wheat	nucleus	40.19	38.74
TraesCS1A01G290300.1	Wheat	cytosol	41.12	38.6
Solyc02g087940.2.1	Tomato	nucleus	29.44	34.24
TraesCS1B01G299500.1	Wheat	plasma membrane	35.51	26.12

Protein Annotations

EnsemblPlants:Bra016454.1	EnsemblPlants:Bra016454.1-P	EnsemblPlantsGene:Bra016454	PANTHER:PTHR31996	SEG:seg	UniParc:UPI0002546B5C
UniProt:M4DIX7	MapMan:35.2	:	:	:	:

Description

AT1G20770 (E=1e-072) | unknown protein

Coordinates

chrA08:+:18547094..18548159

Molecular Weight (calculated)

23158.3 Da

IEP (calculated)

4.921

GRAVY (calculated)

-0.423

Length

214 amino acids

Sequence
(BLAST)

001: MAGAEEIEIC EGGEESIEAE AKTERGDEKV LLQFLDSLDG YLTLMDSLNS KLREGWFDLA SARHSMGTLR INTTLLDLKD HSASSTLQVT DQEVESLGSV
101: HCFALSKWAS KGGSGKGKDF STVADSEMGS PRSPQLRHRG VSGEKPSDKG ETTVLAADEE IKKERAKSLS VFGGLVSPKL RGAQLSFETA LETLVEIANT
201: RSSMLTAFER ISKK

Best Arabidopsis Sequence Match ( AT1G20770.1 )
(BLAST)

001: MAEIYEEGDE SVDVNKESEV KTELGKGGGD ENVLQFLDSL DGYLTLMDSV NSKLREGWFD LASARHSMGT LRINSTLLDL KYHPASSTLQ VTDQDVESLG
101: SVPHFALSKW ASKGGSRKGK DFSTDTDSEI GSPLSPQLRH RGVSEEKPSA KDETVLAADE EIKKERAKSL SVFGGLVSPK LRGAQQSFET ALETLVEIAN
201: MRASMISAFE RITEK

Arabidopsis Description

At1g20770 [Source:UniProtKB/TrEMBL;Acc:Q9LM77]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.